author	consortium	pmid	date	trait	efo	analysis	source	outcome	exposure	covariates	outcome_units	exposure_units	methylation_array	tissue	further_details	n	n_cohorts	age	sex	ethnicity	cpg	chrpos	chr	pos	gene	type	beta	se	p	details	study_id
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26203572	chr7:47797675	7	47797675	-	Open sea	1.09	0.089	2.7e-33	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26884161	chr1:151303917	1	151303917	-	South shelf	-1.52	0.195	0.0000000000000082	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12906108	chr12:124284083	12	124284083	DNAH10	Open sea	-2.44	0.32	0.000000000000036	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01695579	chr16:70571479	16	70571479	SNORD111;SF3B3	Open sea	-2.64	0.349	0.000000000000055	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23961757	chr5:95122534	5	95122534	RHOBTB3	Open sea	-1.51	0.2	0.000000000000068	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13402936	chr15:50471108	15	50471108	-	North shelf	-1.64	0.22	0.00000000000011	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24156331	chr14:93430253	14	93430253	ITPK1	Open sea	-1.16	0.156	0.00000000000017	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg19057076	chr7:16438851	7	16438851	ISPD	Open sea	-1.67	0.228	0.00000000000035	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg07718303	chr12:121261039	12	121261039	SPPL3	Open sea	-1.58	0.216	0.00000000000035	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00162673	chr1:51700514	1	51700514	RNF11	North shore	-1.23	0.169	0.00000000000053	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg22277672	chr7:158444325	7	158444325	NCAPG2	Open sea	-1.27	0.176	0.00000000000069	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg09628499	chr17:56299729	17	56299729	-	South shelf	-1.5	0.208	0.00000000000083	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12361352	chr18:31158540	18	31158540	ASXL3	Open sea	-1.2	0.167	0.00000000000088	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg20034091	chr18:31158527	18	31158527	ASXL3	Open sea	-1.42	0.198	0.0000000000011	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg19385799	chr3:78164711	3	78164711	-	Open sea	-1.99	0.279	0.0000000000012	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05460950	chr7:4800661	7	4800661	FOXK1	Island	1.84	0.261	0.0000000000023	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23013736	chr7:148584684	7	148584684	-	South shelf	-2.1	0.298	0.0000000000023	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23627149	chr1:193155273	1	193155273	B3GALT2;CDC73	Open sea	1.18	0.169	0.0000000000042	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg19430489	chr12:75728104	12	75728104	GLIPR1L1	South shelf	-0.85	0.122	0.0000000000043	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg11880242	chr11:102282062	11	102282062	TMEM123	Open sea	-3.61	0.519	0.0000000000047	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05224124	chr14:35583718	14	35583718	PPP2R3C	Open sea	-1.47	0.212	0.0000000000047	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg16001675	chr8:95430918	8	95430918	RAD54B	Open sea	1.28	0.184	0.000000000005	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg17918270	chr2:1983484	2	1983484	MYT1L	Open sea	-1.78	0.258	0.0000000000062	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg10723575	chr3:149422266	3	149422266	WWTR1	Open sea	-2.15	0.311	0.0000000000064	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg08741809	chr13:20527552	13	20527552	-	North shelf	-1.46	0.212	0.0000000000065	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg20667822	chr11:48153832	11	48153832	PTPRJ	Open sea	-1.4	0.204	0.0000000000077	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24837026	chr3:155607265	3	155607265	GMPS	Open sea	-1.43	0.208	0.0000000000081	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13945578	chr4:164265822	4	164265822	NPY5R	South shore	-1.16	0.169	0.0000000000083	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg27657459	chr17:54853771	17	54853771	-	North shelf	-1.32	0.192	0.0000000000086	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg15328990	chr8:92001646	8	92001646	-	South shelf	0.98	0.143	0.0000000000094	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13403466	chr20:1444630	20	1444630	NSFL1C	North shelf	-1.8	0.263	0.00000000001	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg15857152	chr10:83010483	10	83010483	-	Open sea	1.23	0.18	0.000000000011	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24726965	chr2:63606136	2	63606136	C2orf86	Open sea	0.81	0.119	0.000000000013	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg06371280	chr2:172017419	2	172017419	TLK1	South shore	-1.61	0.237	0.000000000014	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00955895	chr5:43190083	5	43190083	-	North shore	-2	0.295	0.000000000015	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg11976166	chr1:218520090	1	218520090	TGFB2	North shore	-1.49	0.22	0.000000000016	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	ch.5.2738996F	chr5:145864698	5	145864698	TCERG1	Open sea	-1.05	0.155	0.000000000017	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg10825350	chr5:132541078	5	132541078	FSTL4	Open sea	-1.38	0.205	0.000000000019	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01980126	chr6:42835840	6	42835840	KIAA0240	Open sea	-2.02	0.3	0.00000000002	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18092665	chr7:80732349	7	80732349	-	Open sea	0.99	0.148	0.00000000003	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23429981	chr6:97345948	6	97345948	NDUFAF4	Island	1.37	0.206	0.000000000035	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg16954236	chr18:8638786	18	8638786	RAB12	Open sea	-1.39	0.209	0.000000000035	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg06632759	chr19:37702089	19	37702089	ZNF585B	Open sea	-1.6	0.241	0.000000000037	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05180258	chr14:73921198	14	73921198	NUMB	North shelf	-1.08	0.163	0.000000000038	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg08470013	chr3:97805957	3	97805957	OR5AC2	Open sea	1.15	0.174	0.000000000042	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03819338	chr20:39942766	20	39942766	-	North shelf	-2.03	0.306	0.000000000042	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg06183001	chr16:48406857	16	48406857	SIAH1	Open sea	-1.83	0.276	0.000000000043	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg09818637	chr17:20683924	17	20683924	-	North shelf	1.9	0.288	0.000000000054	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12649175	chr2:162927003	2	162927003	DPP4	North shelf	1.83	0.278	0.000000000057	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04330811	chr2:134949779	2	134949779	-	South shore	-2.1	0.32	0.000000000065	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg16840616	chr7:93831	7	93831	-	Open sea	-2.6	0.397	0.000000000067	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26985354	chr19:45567180	19	45567180	SFRS16	Island	1.13	0.173	0.000000000072	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05982597	chr4:177654753	4	177654753	VEGFC	Open sea	0.88	0.135	0.000000000079	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13979573	chr14:21584590	14	21584590	-	Open sea	-1.8	0.276	0.000000000079	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg07684809	chr12:75728212	12	75728212	GLIPR1L1	Open sea	-1.08	0.166	0.000000000091	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg09642739	chr8:42771492	8	42771492	HOOK3	Open sea	-1.17	0.18	0.000000000099	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25157874	chr6:163835117	6	163835117	QKI	Open sea	-1.15	0.177	0.0000000001	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg10412943	chr7:97739696	7	97739696	LMTK2	South shelf	-1.3	0.201	0.00000000011	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18726036	chr6:35543610	6	35543610	FKBP5	Open sea	-2.59	0.401	0.00000000013	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg19264056	chr12:20704653	12	20704653	PDE3A	Island	1.47	0.228	0.00000000013	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01139412	chr19:50316597	19	50316597	FUZ	South shore	1.88	0.291	0.00000000013	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg20566885	chr15:70995014	15	70995014	UACA	Open sea	1.25	0.194	0.00000000015	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23123909	chr5:57878953	5	57878953	RAB3C	Island	-1.49	0.232	0.00000000017	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14569423	chr9:126523663	9	126523663	DENND1A	Open sea	-1.29	0.201	0.00000000017	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg27458327	chr12:56878323	12	56878323	GLS2	North shelf	-1.22	0.19	0.00000000017	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00008800	chr2:38710171	2	38710171	-	Open sea	-0.94	0.147	0.00000000018	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg16976189	chr2:67624291	2	67624291	ETAA1	North shore	-1.16	0.181	0.00000000019	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05592255	chr7:99440199	7	99440199	CYP3A43	Open sea	-1.3	0.203	0.0000000002	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13242090	chr10:97026430	10	97026430	PDLIM1	Open sea	-1.69	0.265	0.0000000002	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00752045	chr17:2588136	17	2588136	PAFAH1B1	Open sea	-1.3	0.203	0.0000000002	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg08866608	chr13:58203798	13	58203798	-	Island	-1.03	0.161	0.00000000021	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13921196	chr6:76603364	6	76603364	MYO6	Open sea	-0.71	0.111	0.00000000022	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05099186	chr13:39923838	13	39923838	LHFP	Open sea	1.77	0.278	0.00000000022	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg11052668	chr6:28626564	6	28626564	-	Open sea	1.54	0.242	0.00000000024	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13425650	chr12:94093761	12	94093761	CRADD	Open sea	-1.44	0.226	0.00000000024	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg19860663	chr12:117348460	12	117348460	FBXW8	North shore	1.4	0.22	0.00000000025	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26883190	chr1:53914086	1	53914086	-	Open sea	-1.97	0.311	0.00000000029	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23562675	chr2:120107745	2	120107745	C2orf76	Open sea	-1.3	0.205	0.00000000029	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05692899	chr18:77342368	18	77342368	-	South shelf	-2.54	0.402	0.0000000003	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14959291	chr3:96532006	3	96532006	EPHA6	North shore	-0.81	0.128	0.00000000032	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12206423	chr13:88330614	13	88330614	SLITRK5	South shore	-0.89	0.141	0.00000000032	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04486648	chr1:63190136	1	63190136	-	Open sea	2.02	0.32	0.00000000033	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01939274	chr5:127874478	5	127874478	FBN2	Island	-1.44	0.228	0.00000000034	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg17477493	chr8:12748272	8	12748272	-	Open sea	-1.22	0.193	0.00000000034	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg07493837	chr6:96025317	6	96025317	MANEA	Island	-1.44	0.229	0.00000000035	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03117577	chr17:20187457	17	20187457	CYTSB	Open sea	1.61	0.256	0.00000000035	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg27109877	chr18:31158549	18	31158549	ASXL3	Open sea	-1.12	0.178	0.00000000035	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00322919	chr10:17172000	10	17172000	CUBN	Open sea	-2.41	0.383	0.00000000036	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18324126	chr8:30890620	8	30890620	WRN;PURG	Open sea	-1.37	0.218	0.00000000041	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03555299	chr2:206830681	2	206830681	-	Open sea	-1.85	0.295	0.00000000042	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23260111	chr10:46158095	10	46158095	ANUBL1	Open sea	-1.27	0.203	0.00000000049	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg22850258	chr7:16438702	7	16438702	ISPD	Open sea	-1.37	0.22	0.00000000051	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26526443	chr6:27141658	6	27141658	-	North shelf	-1.18	0.189	0.00000000052	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01433914	chr10:111792543	10	111792543	ADD3	Open sea	-1.59	0.255	0.00000000056	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg06657560	chr12:121841372	12	121841372	RNF34	South shelf	-1.77	0.284	0.00000000056	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg21507487	chr14:71941057	14	71941057	-	Open sea	-1.47	0.236	0.00000000058	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg06698332	chr1:151967449	1	151967449	S100A10	South shore	-1.58	0.254	0.00000000059	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg08287994	chr6:79788234	6	79788234	PHIP	Island	-1.76	0.284	0.00000000063	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24165760	chr14:103243389	14	103243389	TRAF3	Open sea	-2.07	0.333	0.00000000063	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg09374437	chr19:52769790	19	52769790	-	North shelf	-1.61	0.259	0.00000000064	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03429968	chr1:29245850	1	29245850	EPB41	South shelf	-1.74	0.281	0.00000000065	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01834151	chr15:52971181	15	52971181	KIAA1370	Island	-1.43	0.231	0.00000000066	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg22651271	chr8:141477422	8	141477422	-	South shelf	1.13	0.183	0.00000000072	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg27505193	chr12:124946377	12	124946377	NCOR2	Open sea	-1.54	0.249	0.00000000075	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23508786	chr21:34775291	21	34775291	IFNGR2	North shore	-1.14	0.184	0.00000000075	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26691305	chr10:112896689	10	112896689	-	Open sea	-1.46	0.236	0.00000000076	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg19115692	chr20:34209773	20	34209773	-	South shelf	-1.84	0.298	0.00000000077	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	ch.5.2320326F	chr5:126871056	5	126871056	PRRC1	Open sea	-0.78	0.126	0.00000000079	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg09255966	chr1:2334136	1	2334136	RER1	Island	1.3	0.211	0.00000000082	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg11720863	chr14:24604040	14	24604040	PSME1	North shore	-1.49	0.242	0.00000000084	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13155823	chr8:80993721	8	80993721	TPD52	Open sea	-1.47	0.239	0.00000000091	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg06501333	chr4:103419193	4	103419193	-	North shelf	1.13	0.184	0.000000001	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26714205	chr6:49522045	6	49522045	-	South shelf	-1.11	0.181	0.000000001	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg09136695	chr1:111722281	1	111722281	CEPT1	Open sea	-1.53	0.25	0.0000000011	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg16008440	chr1:161983790	1	161983790	OLFML2B	Open sea	-1.49	0.244	0.0000000011	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14528756	chr2:176862893	2	176862893	KIAA1715	North shelf	1.04	0.17	0.0000000011	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05348870	chr19:6671045	19	6671045	TNFSF14	Open sea	-2.33	0.381	0.0000000011	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg17895289	chr1:241682884	1	241682884	FH	Island	-1.72	0.282	0.0000000012	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04819081	chr2:24026544	2	24026544	ATAD2B	Open sea	0.81	0.133	0.0000000013	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04126335	chr1:145525223	1	145525223	ITGA10	Open sea	-1.07	0.176	0.0000000014	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23523755	chr10:22622459	10	22622459	-	North shore	-1.19	0.196	0.0000000014	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13767940	chr11:111383603	11	111383603	MIR34B;BTG4;MIR34C	Island	-1	0.165	0.0000000014	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12105108	chr18:2571648	18	2571648	METTL4;NDC80	South shore	-1.4	0.23	0.0000000014	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25160554	chr3:97483242	3	97483242	ARL6	Island	-1.29	0.213	0.0000000015	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01021224	chr5:35049428	5	35049428	AGXT2	Open sea	-1.45	0.239	0.0000000015	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02083528	chr1:78280850	1	78280850	FAM73A	South shelf	-1.44	0.238	0.0000000016	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01580574	chr2:134949671	2	134949671	-	Island	-0.99	0.163	0.0000000016	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg08747277	chr6:96048126	6	96048126	MANEA	Open sea	0.97	0.16	0.0000000016	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26848011	chr10:101990206	10	101990206	CHUK	South shore	-1.67	0.276	0.0000000017	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg16118259	chr17:5316884	17	5316884	NUP88	Open sea	-1.13	0.187	0.0000000017	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04104820	chr3:52291169	3	52291169	WDR82	Open sea	-1.09	0.181	0.0000000019	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg21246531	chr9:36039639	9	36039639	RECK	South shelf	-1.06	0.176	0.0000000019	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24152718	chr6:30185818	6	30185818	-	South shelf	-1.96	0.326	0.000000002	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg11806823	chr12:60812268	12	60812268	-	Open sea	0.62	0.103	0.000000002	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25617092	chr4:93225157	4	93225157	GRID2	North shore	-1.43	0.238	0.0000000022	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03457345	chr10:105063519	10	105063519	PCGF6	Open sea	-1.6	0.266	0.0000000022	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg17002899	chr14:21727471	14	21727471	HNRNPC	Open sea	1.94	0.323	0.0000000022	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05999729	chr2:98369433	2	98369433	-	Open sea	-1.26	0.21	0.0000000023	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg19082069	chr6:26018534	6	26018534	HIST1H1A	North shelf	-2.38	0.397	0.0000000023	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23522780	chrX:118712792	X	118712792	UBE2A	South shelf	-1.17	0.195	0.0000000024	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg22637834	chr1:244007281	1	244007281	AKT3	Open sea	1.08	0.18	0.0000000024	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg20864326	chr7:152371422	7	152371422	XRCC2	North shore	-1.08	0.18	0.0000000024	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg16719077	chr10:7849111	10	7849111	ATP5C1	Open sea	-1.26	0.211	0.0000000025	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg07031542	chr1:214567074	1	214567074	PTPN14	Open sea	-1.29	0.216	0.0000000026	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg22865501	chr2:105321544	2	105321544	-	Open sea	-2.27	0.38	0.0000000026	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg22721170	chr8:129141736	8	129141736	-	Open sea	-1.03	0.172	0.0000000026	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26737330	chr4:71200323	4	71200323	C4orf35	Open sea	-1.16	0.194	0.0000000027	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26690511	chr3:155422103	3	155422103	PLCH1	Open sea	-0.93	0.156	0.0000000029	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25889581	chr4:16708336	4	16708336	LDB2	Open sea	1.35	0.227	0.0000000029	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24829313	chr11:63684597	11	63684597	RCOR2	Island	1.39	0.233	0.000000003	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01885839	chr5:111017556	5	111017556	-	Open sea	-2.36	0.397	0.0000000031	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg16955101	chr6:64283916	6	64283916	PTP4A1	South shore	-1.19	0.2	0.0000000031	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg07700920	chr16:84780726	16	84780726	USP10	Open sea	-2.44	0.41	0.0000000031	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg06539434	chr6:101120796	6	101120796	ASCC3	Open sea	0.53	0.089	0.0000000032	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg08066917	chr6:167764146	6	167764146	-	North shore	1.74	0.293	0.0000000032	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02550308	chr16:69310261	16	69310261	SNTB2	Open sea	-1.75	0.294	0.0000000032	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05080787	chr22:50277948	22	50277948	ZBED4	North shore	-1.77	0.298	0.0000000032	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18041207	chr13:72441404	13	72441404	DACH1	South shore	-1.33	0.224	0.0000000033	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg19503731	chr1:244007303	1	244007303	AKT3	Open sea	0.94	0.158	0.0000000034	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg09664975	chr1:84543551	1	84543551	PRKACB	Island	-0.83	0.14	0.0000000035	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg09730015	chr18:43914047	18	43914047	RNF165	Island	-0.91	0.154	0.0000000035	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg06826908	chr1:52155720	1	52155720	OSBPL9	Open sea	-1.57	0.265	0.0000000037	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg09626833	chr13:113174173	13	113174173	TUBGCP3	Open sea	-1.39	0.235	0.0000000037	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02656609	chr17:57228618	17	57228618	SKA2;MIR301A	North shelf	-1.61	0.272	0.0000000037	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg20251156	chr12:55793381	12	55793381	OR6C65	Open sea	1.07	0.181	0.0000000038	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg15508749	chr4:109115092	4	109115092	-	Open sea	-1.4	0.237	0.0000000039	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05841967	chr7:117824643	7	117824643	NAA38	South shore	-1.47	0.249	0.0000000041	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18996590	chr8:30890583	8	30890583	WRN;PURG	Open sea	-1.7	0.288	0.0000000042	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25995995	chr2:240927173	2	240927173	NDUFA10	Open sea	-2.07	0.351	0.0000000044	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01717881	chr17:122697	17	122697	RPH3AL	North shore	-1.67	0.284	0.0000000045	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14051306	chr5:56248243	5	56248243	MIER3	Island	-2.13	0.362	0.0000000046	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18611949	chr2:86668510	2	86668510	KDM3A	Island	-1.22	0.208	0.0000000048	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23138119	chr2:163218380	2	163218380	GCA	Open sea	0.68	0.116	0.0000000048	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04008905	chr6:142644368	6	142644368	GPR126	Open sea	1.17	0.199	0.0000000048	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg20153124	chr8:104897821	8	104897821	RIMS2	Open sea	0.94	0.16	0.0000000048	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg16909341	chr9:130157113	9	130157113	-	North shore	-1.11	0.189	0.0000000049	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26569634	chr2:10760591	2	10760591	NOL10	Open sea	-1.14	0.194	0.000000005	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26480091	chr2:156403454	2	156403454	-	Open sea	0.95	0.162	0.000000005	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	ch.4.3383604F	chr4:184607857	4	184607857	C4orf41	Open sea	-0.85	0.145	0.000000005	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18422875	chr5:113697897	5	113697897	KCNN2	Island	-1.25	0.213	0.000000005	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg16588007	chr3:123300842	3	123300842	PTPLB	North shelf	-1.58	0.269	0.0000000051	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14837557	chr4:25158468	4	25158468	SEPSECS	North shelf	1.16	0.198	0.0000000052	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg10473821	chr17:80894243	17	80894243	TBCD	Open sea	-1.75	0.299	0.0000000052	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01442398	chr16:80838258	16	80838258	CDYL2	Open sea	-1.26	0.215	0.0000000054	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12927915	chr8:66542625	8	66542625	ARMC1	North shelf	-1.14	0.195	0.0000000055	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13902409	chr5:179922147	5	179922147	CNOT6	Island	-1.65	0.282	0.0000000056	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25543578	chr13:62516040	13	62516040	-	Open sea	1.32	0.226	0.0000000056	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01754290	chr7:114066523	7	114066523	FOXP2	Open sea	0.8	0.137	0.0000000057	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03508346	chr11:89059855	11	89059855	NOX4	Open sea	0.92	0.157	0.0000000057	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05393424	chr1:91403111	1	91403111	ZNF644	Open sea	1.26	0.216	0.0000000058	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24140037	chr4:56499522	4	56499522	NMU	North shelf	1.65	0.282	0.0000000058	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18709589	chr6:96969512	6	96969512	KIAA0776	Island	-1	0.171	0.0000000059	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24277876	chr10:98512183	10	98512183	-	South shore	-0.92	0.158	0.0000000059	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14525610	chr12:20848821	12	20848821	SLCO1C1	Open sea	0.97	0.166	0.000000006	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg07258532	chr11:111640893	11	111640893	-	South shelf	-1.55	0.266	0.0000000061	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04519387	chr11:65556438	11	65556438	OVOL1	South shore	-1.09	0.187	0.0000000062	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00221096	chr17:67312052	17	67312052	ABCA5	Open sea	1.3	0.223	0.0000000064	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg07316489	chr5:36876114	5	36876114	NIPBL	Island	-1.07	0.184	0.0000000065	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg27229407	chr1:103572615	1	103572615	COL11A1	Open sea	-1.04	0.179	0.0000000066	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26510700	chr2:193467276	2	193467276	-	Open sea	1.33	0.229	0.0000000067	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg19977964	chr5:56206213	5	56206213	C5orf35	Island	-1.14	0.196	0.0000000068	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18185178	chr6:1516613	6	1516613	-	South shore	-2.55	0.438	0.0000000068	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg06860555	chr10:112672711	10	112672711	NCRNA00081	Open sea	-1.93	0.332	0.0000000068	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05643613	chr3:11592649	3	11592649	ATG7	Open sea	-1.77	0.304	0.0000000069	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25344239	chr1:68326786	1	68326786	-	Open sea	1.7	0.293	0.000000007	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg11416597	chr1:33722623	1	33722623	ZNF362	South shore	-1.27	0.219	0.0000000073	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13596036	chr19:41773743	19	41773743	HNRNPUL1	South shelf	1.75	0.301	0.0000000073	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg06079966	chr6:26237621	6	26237621	-	North shelf	-1.59	0.274	0.0000000076	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00755064	chr7:23749991	7	23749991	STK31	Open sea	2.11	0.364	0.0000000077	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14655858	chr8:37978472	8	37978472	ASH2L	Open sea	-1.82	0.314	0.0000000077	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03976754	chr1:33330006	1	33330006	FNDC5	Open sea	-1.37	0.237	0.000000008	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18991132	chr2:128475701	2	128475701	WDR33	Open sea	-1.77	0.306	0.000000008	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg08870042	chr5:114938148	5	114938148	TMED7-TICAM2;TICAM2	Island	-1.02	0.176	0.0000000084	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18850112	chr2:70329648	2	70329648	-	Open sea	-0.95	0.165	0.0000000087	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12651540	chr15:90191926	15	90191926	KIF7	Island	1.6	0.277	0.0000000088	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg21911007	chr6:43549627	6	43549627	POLH	Island	-1.05	0.182	0.0000000089	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23253460	chr1:84709527	1	84709527	-	Open sea	-1.32	0.229	0.000000009	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg11116094	chr4:3278748	4	3278748	-	Open sea	-1.67	0.289	0.000000009	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23466916	chr2:192543328	2	192543328	OBFC2A	Island	-1.23	0.213	0.0000000093	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24690060	chr2:77329502	2	77329502	LRRTM4	Open sea	1.12	0.194	0.0000000093	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg22374415	chr2:188210673	2	188210673	CALCRL	Open sea	0.85	0.148	0.0000000094	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00096106	chr5:100176809	5	100176809	ST8SIA4	Open sea	-0.77	0.134	0.0000000095	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg09547427	chr5:1055427	5	1055427	SLC12A7	North shore	-1.56	0.271	0.0000000096	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg07470367	chr1:107684425	1	107684425	NTNG1	Island	-1.02	0.177	0.00000001	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03578005	chr4:77170672	4	77170672	-	North shore	-1.51	0.263	0.00000001	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26077283	chr5:37815776	5	37815776	GDNF	Open sea	1.54	0.268	0.00000001	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg17930169	chr14:101406815	14	101406815	SNORD113-7	Open sea	0.55	0.096	0.00000001	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg27418500	chr2:123758682	2	123758682	-	Open sea	1.57	0.274	0.000000011	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg09491068	chr4:41478990	4	41478990	LIMCH1	Open sea	1.99	0.347	0.000000011	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14593420	chr12:1708017	12	1708017	-	South shelf	-1.61	0.281	0.000000011	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04258046	chr15:63445591	15	63445591	RPS27L	North shelf	-1.12	0.195	0.000000011	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13865248	chr1:214842875	1	214842875	-	Open sea	-1.35	0.236	0.000000012	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05059169	chr2:198339611	2	198339611	COQ10B	Open sea	-1.81	0.316	0.000000012	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01954930	chr3:94656939	3	94656939	LOC255025	Island	1.77	0.309	0.000000012	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23629643	chr4:77547320	4	77547320	SHROOM3	Open sea	-1.45	0.254	0.000000012	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03943571	chr7:24612635	7	24612635	MPP6	Open sea	-1.29	0.226	0.000000012	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg06405430	chr7:82446070	7	82446070	PCLO	Open sea	0.78	0.136	0.000000012	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg16574347	chr13:78327370	13	78327370	SLAIN1	Open sea	-1.73	0.302	0.000000012	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25399333	chr13:50856824	13	50856824	-	Open sea	-1.6	0.28	0.000000012	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13153796	chr14:101405628	14	101405628	SNORD113-6	Open sea	0.85	0.149	0.000000012	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02672530	chr20:34680964	20	34680964	-	Island	-0.64	0.112	0.000000012	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04902899	chr1:1717822	1	1717822	GNB1	South shelf	-1.94	0.34	0.000000013	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12212217	chr1:35916872	1	35916872	KIAA0319L	Open sea	1.24	0.217	0.000000013	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg19723678	chr1:178241791	1	178241791	RASAL2	Open sea	-1.41	0.247	0.000000013	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg21584883	chr1:93645960	1	93645960	TMED5;CCDC18	Island	-0.82	0.144	0.000000013	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01691522	chr5:42998521	5	42998521	-	North shore	-1.57	0.275	0.000000013	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg08463715	chr5:60050299	5	60050299	ELOVL7	Open sea	1.36	0.238	0.000000013	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04443690	chr6:113370857	6	113370857	-	Open sea	1.25	0.219	0.000000013	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23819836	chr6:15663134	6	15663134	DTNBP1	Island	0.91	0.159	0.000000013	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01962989	chr8:93933251	8	93933251	C8orf83	Open sea	0.92	0.161	0.000000013	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13707189	chr9:19028399	9	19028399	FAM154A	South shore	-1.4	0.245	0.000000013	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13544125	chr11:14661502	11	14661502	PSMA1	North shelf	1.53	0.268	0.000000013	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14792031	chr13:41707137	13	41707137	KBTBD6	South shore	1.08	0.189	0.000000013	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00152047	chr1:166893354	1	166893354	ILDR2	South shelf	1.31	0.23	0.000000014	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg17492152	chr1:39461048	1	39461048	AKIRIN1	South shelf	-1.15	0.202	0.000000014	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	ch.1.543953R	chr1:15965817	1	15965817	DDI2	Open sea	1.46	0.256	0.000000014	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13769605	chr2:12857067	2	12857067	TRIB2	Island	-1.19	0.209	0.000000014	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg09333077	chr6:27118882	6	27118882	-	South shelf	-1.19	0.209	0.000000014	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04709675	chr7:75541952	7	75541952	-	North shelf	1.9	0.334	0.000000014	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01356948	chr8:116652764	8	116652764	TRPS1	Open sea	1.63	0.286	0.000000014	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25982561	chr11:22696308	11	22696308	GAS2	Open sea	1.64	0.288	0.000000014	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00089798	chr12:62585204	12	62585204	FAM19A2	Island	-1.21	0.213	0.000000014	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg22731164	chr15:40192158	15	40192158	GPR176	Open sea	-1.68	0.295	0.000000014	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14253939	chr1:228674594	1	228674594	RNF187	Island	2.02	0.356	0.000000015	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg20402000	chr5:107007640	5	107007640	EFNA5	Island	-1.3	0.229	0.000000015	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24555763	chr8:53300817	8	53300817	ST18	Open sea	-1.51	0.266	0.000000015	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14614403	chr9:20621888	9	20621888	MLLT3	South shore	-1.62	0.285	0.000000015	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02320474	chr16:1758022	16	1758022	MAPK8IP3	Open sea	-0.8	0.141	0.000000015	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg08943393	chr2:166325622	2	166325622	-	Open sea	1.13	0.199	0.000000016	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12267933	chr2:228176991	2	228176991	COL4A3	Open sea	-1.23	0.217	0.000000016	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg08784317	chr7:39731097	7	39731097	RALA	Open sea	-1.82	0.321	0.000000016	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg08460590	chr17:7495881	17	7495881	FXR2	South shelf	-1.11	0.196	0.000000016	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00158654	chr1:192285333	1	192285333	RGS21	Open sea	0.77	0.136	0.000000017	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25300234	chr2:212938740	2	212938740	ERBB4	Open sea	1.04	0.184	0.000000017	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14671926	chr6:169930772	6	169930772	WDR27	Open sea	-1.08	0.191	0.000000017	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18243542	chr7:27843409	7	27843409	TAX1BP1	Open sea	1.18	0.209	0.000000017	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01296653	chr9:4678949	9	4678949	CDC37L1	North shore	1.31	0.231	0.000000017	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05834354	chr11:3116865	11	3116865	OSBPL5	South shore	-1.65	0.292	0.000000017	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg11505180	chr12:75724112	12	75724112	CAPS2	Island	-1.58	0.279	0.000000017	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04813639	chr15:79383947	15	79383947	RASGRF1	Island	-1.02	0.18	0.000000017	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg17945004	chr17:58984873	17	58984873	BCAS3	Open sea	1.25	0.221	0.000000017	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg27172769	chr19:1255283	19	1255283	MIDN	Island	2.15	0.38	0.000000017	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12267786	chr4:164395093	4	164395093	TKTL2	South shore	1.85	0.327	0.000000018	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25710815	chr4:89300116	4	89300116	HERC6	Island	-1.15	0.204	0.000000018	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13894852	chr17:47502298	17	47502298	-	Open sea	-0.78	0.138	0.000000018	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00322319	chr2:162094696	2	162094696	-	Island	-1.09	0.193	0.000000019	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12927270	chr3:94656950	3	94656950	LOC255025	Island	1.59	0.282	0.000000019	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg06127316	chr11:9599460	11	9599460	WEE1	South shelf	-0.91	0.161	0.000000019	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01940508	chr17:5185538	17	5185538	RABEP1	Island	-1.42	0.252	0.000000019	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18569070	chr19:17136562	19	17136562	CPAMD8	Open sea	-1.75	0.31	0.000000019	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02540338	chr2:217243695	2	217243695	-	Open sea	-1.44	0.256	0.00000002	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03754165	chr2:60780427	2	60780427	BCL11A	North shore	0.83	0.147	0.00000002	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg22902939	chr2:201355148	2	201355148	KCTD18	Open sea	2.85	0.506	0.00000002	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg21331107	chr3:32541698	3	32541698	CMTM6	North shelf	-1.38	0.245	0.00000002	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg19494811	chr6:34356253	6	34356253	NUDT3	North shelf	-1.54	0.273	0.00000002	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14783123	chr8:68022262	8	68022262	CSPP1	Open sea	1.06	0.189	0.000000021	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg20006187	chr11:44410456	11	44410456	-	Open sea	-1.24	0.221	0.000000021	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24124753	chr3:120461562	3	120461562	GTF2E1;RABL3	Open sea	1.95	0.347	0.000000022	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25699837	chr3:163722294	3	163722294	-	Island	0.97	0.173	0.000000023	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg22838281	chr11:61133580	11	61133580	TMEM138	South shelf	1.5	0.268	0.000000023	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg16743903	chr16:89593216	16	89593216	SPG7	Island	-1.54	0.275	0.000000023	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04864152	chr17:19247902	17	19247902	MIR1180;B9D1	Island	-1.33	0.237	0.000000023	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01214384	chr5:120179610	5	120179610	-	Open sea	1.46	0.261	0.000000024	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04455567	chr6:3425259	6	3425259	SLC22A23	Open sea	-1.45	0.259	0.000000024	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00603225	chr13:65724231	13	65724231	-	Open sea	1.31	0.234	0.000000024	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg10517312	chr15:45027253	15	45027253	TRIM69	Open sea	2.01	0.359	0.000000024	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg10812466	chr19:32718114	19	32718114	-	South shelf	-1.21	0.216	0.000000024	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg19780570	chr5:133764548	5	133764548	-	Open sea	-1.07	0.191	0.000000025	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24770230	chr5:115194332	5	115194332	AP3S1	Open sea	-1	0.179	0.000000025	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg08320413	chr10:127455161	10	127455161	MMP21	Open sea	-1.35	0.241	0.000000025	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg22727572	chr2:63272334	2	63272334	LOC100132215;EHBP1	Island	1.64	0.294	0.000000026	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26364903	chr2:67624840	2	67624840	ETAA1	Island	-0.72	0.129	0.000000026	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03906820	chr10:134913608	10	134913608	GPR123	Island	-1.24	0.222	0.000000026	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26051433	chr10:75001410	10	75001410	FAM149B1	Open sea	-1.44	0.258	0.000000026	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18748575	chr20:400950	20	400950	RBCK1	South shore	1.96	0.351	0.000000026	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01326123	chr6:63157784	6	63157784	-	Open sea	0.92	0.165	0.000000027	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14814018	chr11:57482501	11	57482501	TMX2	South shelf	-1.23	0.221	0.000000027	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12578250	chr1:3343557	1	3343557	PRDM16	South shore	-1.44	0.258	0.000000028	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg27502952	chr2:242351401	2	242351401	FARP2	Open sea	-1.35	0.242	0.000000028	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02035961	chr7:6288071	7	6288071	CYTH3	Open sea	1.3	0.233	0.000000028	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	ch.11.2136200F	chr11:103819223	11	103819223	PDGFD	Open sea	1.34	0.241	0.000000028	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05708079	chr12:90102477	12	90102477	LOC338758	Island	-1.26	0.226	0.000000028	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02704594	chr13:82264029	13	82264029	-	Open sea	0.75	0.135	0.000000028	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03990819	chr2:434332	2	434332	-	Open sea	1.26	0.226	0.000000029	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25783997	chr2:185462928	2	185462928	ZNF804A	North shore	-0.75	0.135	0.000000029	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13517866	chr6:168970787	6	168970787	SMOC2	North shore	-1.69	0.304	0.000000029	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03539267	chr10:133823899	10	133823899	-	Open sea	-0.69	0.124	0.000000029	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24654185	chr2:99812274	2	99812274	MRPL30	Open sea	-0.94	0.169	0.00000003	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05575304	chr3:11607115	3	11607115	VGLL4	North shelf	-1.28	0.23	0.000000031	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01581024	chr8:142009794	8	142009794	PTK2	North shore	-1.47	0.265	0.000000031	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01075555	chr13:63264349	13	63264349	-	Open sea	0.71	0.128	0.000000031	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg10245797	chr14:101437325	14	101437325	SNORD114-14	Open sea	0.88	0.158	0.000000031	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00011346	chr2:213403859	2	213403859	ERBB4	Island	-0.89	0.16	0.000000032	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg11496226	chr12:129571803	12	129571803	TMEM132D	Open sea	-1.73	0.312	0.000000032	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14709234	chr1:55684020	1	55684020	-	South shelf	-0.97	0.175	0.000000033	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12861602	chr8:99045811	8	99045811	MATN2	Open sea	-0.94	0.17	0.000000033	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg19873199	chr10:1547478	10	1547478	ADARB2	Open sea	-1.31	0.236	0.000000033	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg21074594	chr11:43665775	11	43665775	-	Open sea	-0.89	0.161	0.000000033	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02704946	chr17:6527184	17	6527184	KIAA0753	Open sea	-1.71	0.309	0.000000034	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14868594	chr17:19913217	17	19913217	-	Island	-1	0.181	0.000000034	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	ch.3.1113149F	chr3:51461419	3	51461419	VPRBP	Open sea	1.13	0.204	0.000000035	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg17345859	chr7:6728525	7	6728525	ZNF12	Open sea	-1.53	0.277	0.000000035	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03850730	chr15:62531125	15	62531125	-	Open sea	1.34	0.242	0.000000035	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg10293804	chr16:3068529	16	3068529	CLDN6	North shore	-0.84	0.152	0.000000035	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00498691	chr19:40315143	19	40315143	-	Island	-0.95	0.172	0.000000035	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02679291	chr19:48248902	19	48248902	GLTSCR2	Island	1.9	0.343	0.000000035	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25325053	chr20:58533022	20	58533022	CDH26	Open sea	-1.64	0.296	0.000000035	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24062706	chr22:30658924	22	30658924	OSM	Open sea	1.08	0.195	0.000000035	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg20234959	chr1:236237760	1	236237760	-	Open sea	-1.55	0.28	0.000000036	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg22029640	chr1:55501145	1	55501145	-	North shelf	-1.19	0.215	0.000000036	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg08172999	chr2:200775722	2	200775722	C2orf69	North shore	-0.95	0.172	0.000000036	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23756322	chr6:72924771	6	72924771	RIMS1	Open sea	0.75	0.136	0.000000036	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg10461088	chr11:47198846	11	47198846	ARFGAP2	Island	1.18	0.214	0.000000037	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23173466	chr14:65565498	14	65565498	MAX	North shelf	0.93	0.168	0.000000037	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23419170	chr18:12067067	18	12067067	-	North shore	3.3	0.598	0.000000037	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23535170	chr3:179489892	3	179489892	USP13	Open sea	-0.95	0.172	0.000000038	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26771998	chr10:75490334	10	75490334	BMS1P4	Island	0.6	0.109	0.000000038	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14703610	chr5:56206110	5	56206110	C5orf35	Island	-1.13	0.205	0.000000039	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg06914774	chr7:2908787	7	2908787	-	Open sea	-1	0.181	0.000000039	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg15023858	chr3:69812434	3	69812434	MITF	Open sea	-1.55	0.281	0.00000004	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14995416	chr3:159713351	3	159713351	IL12A	Open sea	-1.26	0.229	0.00000004	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02452058	chr5:9430822	5	9430822	SEMA5A	Open sea	1.46	0.265	0.00000004	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25433855	chr4:102268622	4	102268622	PPP3CA	Island	-1.01	0.184	0.000000041	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg22700091	chr15:48470612	15	48470612	MYEF2	Island	-1.36	0.247	0.000000041	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg08355109	chr19:56599667	19	56599667	ZNF787	Island	2.01	0.365	0.000000041	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	ch.1.385573R	chr1:10464086	1	10464086	PGD	Open sea	0.97	0.176	0.000000042	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg07038342	chr3:145969625	3	145969625	PLSCR4	South shore	1.12	0.204	0.000000042	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg20890313	chr7:26904699	7	26904699	SKAP2	Island	-1.01	0.184	0.000000042	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg27129363	chr12:95376814	12	95376814	NDUFA12	Open sea	2	0.364	0.000000042	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23032598	chr20:17512795	20	17512795	BFSP1	South shore	-1.08	0.196	0.000000042	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01162841	chrX:19818905	X	19818905	SH3KBP1	Open sea	-1.4	0.255	0.000000043	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg06006512	chr3:89221147	3	89221147	EPHA3	Open sea	0.9	0.164	0.000000043	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg08431693	chr7:99680287	7	99680287	ZNF3	South shore	-0.81	0.147	0.000000043	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg15093079	chr3:96533290	3	96533290	EPHA6	Island	-1.19	0.217	0.000000044	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24980696	chr3:56720960	3	56720960	-	South shelf	-1.62	0.295	0.000000044	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg19934194	chr7:6286149	7	6286149	CYTH3	Open sea	-1.42	0.259	0.000000044	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02309725	chr10:120454304	10	120454304	C10orf46	Open sea	-1.29	0.235	0.000000044	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg22473961	chr12:56119258	12	56119258	CD63	North shelf	-1.12	0.204	0.000000044	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25768273	chr1:211911579	1	211911579	-	Open sea	-1.16	0.211	0.000000045	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg16511076	chr4:48887480	4	48887480	OCIAD2	Open sea	-1.46	0.266	0.000000046	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24495177	chr7:64362326	7	64362326	ZNF273	Open sea	-1.01	0.184	0.000000046	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25269643	chr7:151042396	7	151042396	NUB1	South shelf	-1.56	0.284	0.000000046	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg22152887	chr11:72849944	11	72849944	FCHSD2	North shelf	-1.91	0.348	0.000000046	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01691987	chr17:7789028	17	7789028	CHD3	Island	-0.98	0.179	0.000000046	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03935117	chr1:53191150	1	53191150	ZYG11B	North shore	1.5	0.274	0.000000047	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12427162	chr1:168198488	1	168198488	SFT2D2	South shelf	-0.96	0.175	0.000000047	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00911289	chr3:128840257	3	128840257	RAB43	Island	-1.24	0.226	0.000000047	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26995035	chr13:113785830	13	113785830	F10	South shore	-1.31	0.239	0.000000047	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg21527414	chr15:65906825	15	65906825	-	South shelf	-1.41	0.257	0.000000047	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02474193	chr19:41630546	19	41630546	CYP2F1	Island	2.06	0.376	0.000000047	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04409048	chr6:146203625	6	146203625	-	Open sea	1.6	0.292	0.000000048	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg21331362	chr6:26221330	6	26221330	-	South shelf	-1.08	0.197	0.000000048	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04606669	chr3:52318566	3	52318566	-	North shelf	-1.4	0.256	0.000000049	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg19707326	chr14:24787611	14	24787611	ADCY4	South shore	1.83	0.334	0.000000049	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25282951	chr1:15095376	1	15095376	KIAA1026	Open sea	-1.13	0.207	0.000000051	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02095456	chr2:153189667	2	153189667	-	North shore	-1.46	0.267	0.000000051	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00451651	chr8:100252466	8	100252466	VPS13B	Open sea	0.67	0.123	0.000000051	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25282652	chr12:128364739	12	128364739	-	Open sea	-1.09	0.199	0.000000051	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04177287	chr4:21857313	4	21857313	KCNIP4	Open sea	1.13	0.207	0.000000052	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg19325435	chr22:22839645	22	22839645	ZNF280B	Open sea	-1.58	0.289	0.000000052	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04849508	chr7:2801959	7	2801959	GNA12	North shore	-1.63	0.299	0.000000053	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18553202	chr7:63893881	7	63893881	LOC649395	Open sea	0.92	0.169	0.000000053	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04139515	chr13:78272639	13	78272639	SLAIN1	Island	-0.77	0.141	0.000000053	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04195226	chr17:16158686	17	16158686	PIGL	Open sea	-1.16	0.213	0.000000053	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02782889	chr17:47074637	17	47074637	IGF2BP1	Island	-0.63	0.115	0.000000053	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04880138	chr11:1007119	11	1007119	AP2A2	North shore	-1.29	0.236	0.000000054	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25951582	chr15:49913451	15	49913451	C15orf33;DTWD1	Island	-1.33	0.244	0.000000054	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04614760	chr19:40022828	19	40022828	EID2B	North shore	-1.09	0.2	0.000000054	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23400904	chr2:70418872	2	70418872	C2orf42	South shore	-1.77	0.325	0.000000055	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25217313	chr15:41624774	15	41624774	NUSAP1;OIP5	Island	-1.79	0.328	0.000000055	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02555585	chr20:42090853	20	42090853	SFRS6	South shelf	-1.2	0.22	0.000000055	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg17297071	chr21:26934424	21	26934424	MIR155HG	Island	-1.18	0.216	0.000000055	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg21611262	chr5:145252443	5	145252443	GRXCR2	Open sea	1.85	0.34	0.000000056	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg21107103	chr11:18630052	11	18630052	SPTY2D1	Open sea	-0.94	0.173	0.000000056	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26869362	chr11:105947257	11	105947257	KBTBD3;AASDHPPT	North shore	-1.16	0.213	0.000000057	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02593615	chr13:45918202	13	45918202	LOC100190939	South shelf	-1.44	0.264	0.000000057	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14908986	chr11:70120720	11	70120720	PPFIA1	South shelf	1.4	0.257	0.000000058	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg16709294	chr14:70235567	14	70235567	SFRS5;LOC100289511	South shore	-1.97	0.362	0.000000058	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg10542300	chr15:48442807	15	48442807	MYEF2	Open sea	0.62	0.114	0.000000058	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02296167	chr20:62363890	20	62363890	ZGPAT	North shelf	-1.22	0.224	0.000000058	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg15963983	chr3:71020458	3	71020458	FOXP1	Open sea	-1.66	0.305	0.000000059	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01566592	chr8:104512858	8	104512858	RIMS2	Island	-1.02	0.188	0.000000059	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg07010207	chr14:21238111	14	21238111	FAM12B	Open sea	-1.5	0.276	0.000000059	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg16678153	chr1:82265969	1	82265969	LPHN2	North shore	-0.81	0.149	0.00000006	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg10671757	chr2:180722610	2	180722610	ZNF385B	North shelf	1.22	0.225	0.000000061	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03202213	chr3:85006115	3	85006115	-	North shelf	1.15	0.212	0.000000061	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	ch.10.202299R	chr10:6548100	10	6548100	PRKCQ	Open sea	1.05	0.193	0.000000061	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01259104	chr12:133340965	12	133340965	-	Island	2.07	0.381	0.000000061	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg06193393	chr7:99869454	7	99869454	GATS	Island	1.16	0.214	0.000000062	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18454990	chr7:1178137	7	1178137	C7orf50	Island	-0.87	0.16	0.000000062	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23281307	chr2:202142817	2	202142817	CASP8	Open sea	-1.56	0.288	0.000000064	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24007445	chr3:194224524	3	194224524	-	Open sea	-1.44	0.265	0.000000064	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05099288	chr6:109700555	6	109700555	CD164	North shelf	1.02	0.188	0.000000064	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg09921682	chr7:50133131	7	50133131	ZPBP	South shore	1.93	0.356	0.000000064	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg01551787	chr3:72982378	3	72982378	GXYLT2	Open sea	-1.34	0.247	0.000000065	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04326887	chr3:73086974	3	73086974	PPP4R2	Open sea	-1.66	0.306	0.000000065	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02945007	chr4:141294667	4	141294667	SCOC	Island	-1.2	0.221	0.000000065	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25289973	chr4:41362397	4	41362397	LIMCH1	Island	-1.55	0.286	0.000000065	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14840502	chr6:22623897	6	22623897	-	Open sea	1.13	0.209	0.000000067	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg22229470	chr6:168107104	6	168107104	-	South shore	0.64	0.118	0.000000067	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg13848802	chr4:144434253	4	144434253	SMARCA5	Island	-0.9	0.166	0.000000068	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg27020028	chr14:23304823	14	23304823	MMP14	North shore	1.25	0.231	0.000000068	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg11882601	chr8:103524881	8	103524881	-	Open sea	-0.99	0.183	0.000000069	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg09186482	chr17:8082780	17	8082780	-	South shelf	-1.43	0.264	0.000000069	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12751354	chr20:52770785	20	52770785	CYP24A1	Open sea	-1.07	0.198	0.00000007	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24915236	chr6:31936514	6	31936514	SKIV2L	North shelf	-1.24	0.229	0.000000071	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg21921829	chr7:116850153	7	116850153	ST7	Open sea	-1.18	0.218	0.000000072	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg07578073	chr10:11232505	10	11232505	CUGBP2	Open sea	-1.06	0.196	0.000000072	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg11741168	chr15:64673872	15	64673872	KIAA0101	Open sea	1.14	0.211	0.000000072	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12196367	chr3:183892577	3	183892577	AP2M1	Island	1.79	0.331	0.000000073	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg19668728	chr14:53907837	14	53907837	-	Open sea	-1.41	0.261	0.000000073	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	ch.7.2714749F	chr7:130688396	7	130688396	FLJ43663	Open sea	1.1	0.204	0.000000074	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04872851	chr3:127007606	3	127007606	-	Open sea	1.01	0.187	0.000000075	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12968518	chr2:148602504	2	148602504	ACVR2A	Island	-0.51	0.095	0.000000076	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24685239	chr3:105159482	3	105159482	ALCAM	Open sea	1.39	0.258	0.000000076	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03218192	chr17:33914403	17	33914403	AP2B1	Open sea	1.37	0.254	0.000000076	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23828765	chr12:78340971	12	78340971	NAV3	Open sea	0.67	0.124	0.000000077	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg27150417	chr20:44462035	20	44462035	SNX21	North shore	-0.84	0.156	0.000000077	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18462916	chr13:113918539	13	113918539	CUL4A	South shore	-1.52	0.282	0.000000078	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02539984	chr15:58960059	15	58960059	ADAM10	Open sea	1.2	0.223	0.000000078	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12191300	chr2:174873689	2	174873689	-	North shelf	-1.34	0.249	0.000000079	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00086426	chr16:10934373	16	10934373	-	Open sea	-1.04	0.193	0.000000079	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25248628	chr10:22518027	10	22518027	-	Island	-1.3	0.241	0.00000008	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23231974	chr1:11994899	1	11994899	PLOD1	Island	2.3	0.427	0.000000081	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg26992150	chr4:184917686	4	184917686	STOX2	Open sea	-1.15	0.214	0.000000081	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg00350885	chr7:50860872	7	50860872	GRB10	North shore	-1.16	0.216	0.000000081	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04474209	chr15:52484920	15	52484920	MYO5C;GNB5	Open sea	-0.95	0.177	0.000000081	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg11750112	chr1:64938742	1	64938742	CACHD1	South shelf	-1.66	0.309	0.000000082	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg07591442	chr2:69615105	2	69615105	GFPT1	South shore	-1.92	0.357	0.000000082	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18019515	chr5:142783385	5	142783385	NR3C1	Island	-1.52	0.283	0.000000082	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04256065	chr17:76102509	17	76102509	TNRC6C	South shore	-1.45	0.27	0.000000082	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg07899956	chr17:74261249	17	74261249	FAM100B	Island	0.94	0.175	0.000000082	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg09151613	chr2:218301065	2	218301065	DIRC3	Open sea	1.49	0.277	0.000000083	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg06479434	chr7:128395929	7	128395929	CALU	Open sea	-1.49	0.277	0.000000083	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg15470836	chr13:100648306	13	100648306	-	North shore	1.19	0.221	0.000000083	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg07093953	chr14:101004930	14	101004930	BEGAIN	Island	-1.48	0.275	0.000000083	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg03037033	chr2:86668736	2	86668736	KDM3A	Island	-1.95	0.363	0.000000084	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg11606826	chr6:30540994	6	30540994	ABCF1	South shore	1.68	0.313	0.000000084	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14739378	chr6:46655306	6	46655306	TDRD6	Island	2.11	0.393	0.000000084	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg23902105	chr6:22009091	6	22009091	FLJ22536	Open sea	1.2	0.223	0.000000084	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg09814151	chr13:45151437	13	45151437	TSC22D1	Island	-1.19	0.221	0.000000084	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12803724	chr8:79578360	8	79578360	FAM164A	Island	-1.35	0.251	0.000000085	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg18990313	chr8:38831598	8	38831598	HTRA4	Island	-0.69	0.128	0.000000085	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02421207	chr10:64817824	10	64817824	-	Open sea	1.36	0.253	0.000000085	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg17940200	chr2:19170947	2	19170947	-	Open sea	1.48	0.276	0.000000086	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	ch.18.658499F	chr18:33592866	18	33592866	RPRD1A	Open sea	1.23	0.229	0.000000087	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg08418508	chr5:159830462	5	159830462	SLU7	South shelf	1.71	0.319	0.000000088	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02456218	chr5:180476573	5	180476573	BTNL9	North shelf	-1.07	0.199	0.000000089	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg07180460	chr5:60627633	5	60627633	ZSWIM6	Island	-1.4	0.261	0.000000089	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg16576300	chrX:64136881	X	64136881	ZC4H2	Open sea	0.93	0.173	0.00000009	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg25202000	chr2:188754840	2	188754840	-	Open sea	0.97	0.181	0.00000009	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg07439409	chr6:97731296	6	97731296	MIR548H3;C6orf167	South shore	0.97	0.181	0.000000092	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg20749212	chr11:31262762	11	31262762	-	Open sea	0.66	0.123	0.000000092	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg11630696	chr3:79817333	3	79817333	ROBO1	South shore	-0.71	0.133	0.000000093	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14468913	chr1:218338809	1	218338809	-	Island	-0.79	0.148	0.000000094	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02921003	chr12:75728281	12	75728281	GLIPR1L1	Open sea	-0.8	0.149	0.000000094	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05977776	chr2:3741732	2	3741732	ALLC	Open sea	1.46	0.273	0.000000095	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg06193628	chr2:228526145	2	228526145	-	Open sea	1.38	0.258	0.000000095	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg05660889	chr5:6687293	5	6687293	-	Open sea	-0.96	0.179	0.000000095	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg07933493	chr12:57345934	12	57345934	RDH16	Open sea	-1.67	0.312	0.000000095	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg11433319	chr21:19617873	21	19617873	CHODL	Island	-1.28	0.239	0.000000095	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24310785	chr6:163985223	6	163985223	QKI	Open sea	0.92	0.172	0.000000096	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg11697159	chr14:89259164	14	89259164	EML5	Island	-1.27	0.237	0.000000096	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg04939900	chr16:48411586	16	48411586	SIAH1	Open sea	-1.51	0.282	0.000000096	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg20278381	chr10:69682560	10	69682560	HERC4	Open sea	-1.33	0.249	0.000000098	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg12085704	chr19:12774100	19	12774100	MAN2B1	North shelf	1.7	0.318	0.000000098	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg02571204	chr10:114591733	10	114591733	-	Open sea	-1.54	0.288	0.0000001	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24476842	chr12:72179582	12	72179582	RAB21	Open sea	1.14	0.213	0.0000001	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg14640532	chr17:16880871	17	16880871	-	Open sea	-1.75	0.328	0.0000001	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery
Xu Z	Sister Study	30989176	2019-04-15	breast cancer	EFO_0000305	Case vs Control Discovery	Supplementary Table 1	DNA methylation	breast cancer	cell composition (reference based), batch effects	Beta Values	None	Illumina HumanMethylation450	Whole blood	None	2443	1	Adults	Females	European	cg24757346	chr19:35629022	19	35629022	FXYD1	North shelf	-1.73	0.324	0.0000001	None	30989176_Xu-Z_breast_cancer_case_vs_control_discovery