author	consortium	pmid	date	trait	efo	analysis	source	outcome	exposure	covariates	outcome_units	exposure_units	methylation_array	tissue	further_details	n	n_cohorts	age	sex	ethnicity	cpg	chrpos	chr	pos	gene	type	beta	se	p	details	study_id
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27392771	chr19:13125851	19	13125851	NFIX	South shore	0.09449764	0.00992249	0.00000000000000525	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03242964	chr19:3381991	19	3381991	NFIC	Island	0.08818791	0.00971404	0.0000000000000413	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27448161	chr12:53472792	12	53472792	SPRYD3	North shore	-0.040927	0.00453776	0.0000000000000543	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02532017	chr2:241974917	2	241974917	SNED1	Island	0.07892773	0.00884078	0.000000000000083	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01634146	chr19:13127389	19	13127389	NFIX	South shelf	0.18643421	0.02220825	0.00000000000098	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05840541	chr22:50482925	22	50482925	TTLL8	North shore	-0.07473156	0.00890954	0.00000000000101	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25636466	chr6:46652700	6	46652700	-	North shelf	-0.09105014	0.01092499	0.0000000000013	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18623216	chr3:155421970	3	155421970	PLCH1	Open sea	-0.08622849	0.01046507	0.00000000000201	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12155547	chr11:65194965	11	65194965	-	South shelf	-0.11094568	0.01405761	0.00000000000996	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12697139	chr1:209571889	1	209571889	-	Open sea	-0.13097916	0.01697358	0.0000000000223	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02294302	chr1:47906276	1	47906276	FOXD2	South shore	0.05340871	0.0069221	0.0000000000224	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20600850	chr12:6712515	12	6712515	CHD4	North shelf	-0.03202052	0.00423196	0.0000000000444	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12970171	chr5:6766613	5	6766613	-	Open sea	-0.05085583	0.00674371	0.0000000000498	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02017450	chr10:10631670	10	10631670	-	Open sea	-0.14135445	0.01883908	0.0000000000593	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03433048	chr17:4806453	17	4806453	CHRNE	South shore	-0.06826551	0.00937645	0.000000000164	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14623715	chr6:136174534	6	136174534	PDE7B	Open sea	0.14206413	0.01975735	0.000000000246	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24378227	chr6:1396771	6	1396771	-	South shelf	0.06084411	0.00847127	0.000000000255	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07644939	chr2:241976658	2	241976658	SNED1	South shore	0.09392735	0.01315875	0.000000000312	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23889047	chr1:7705756	1	7705756	CAMTA1	Open sea	-0.06748299	0.00946431	0.000000000323	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26216433	chr14:104346591	14	104346591	-	Open sea	-0.09245887	0.01320876	0.000000000583	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04685228	chr5:172462626	5	172462626	-	Open sea	-0.04773078	0.00688847	0.000000000801	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24296397	chr3:49692537	3	49692537	BSN	South shelf	-0.07082288	0.01025562	0.00000000089	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20534570	chr22:41763093	22	41763093	TEF	Open sea	-0.04961494	0.00718859	0.000000000905	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00257775	chr6:37904681	6	37904681	ZFAND3	Open sea	-0.1167039	0.01693245	0.000000000945	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03390636	chr15:80843452	15	80843452	ARNT2	Open sea	-0.04861345	0.00707156	0.00000000102	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03157226	chr19:10654180	19	10654180	ATG4D	North shore	-0.03140044	0.00456728	0.00000000102	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04364219	chr2:45234140	2	45234140	SIX2	North shore	0.07724108	0.01125796	0.00000000109	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02818170	chr19:3336941	19	3336941	-	Open sea	-0.08052794	0.01175097	0.00000000113	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03875330	chr19:11455923	19	11455923	TMEM205;CCDC159	North shore	-0.07759714	0.01134121	0.00000000118	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01797169	chr12:107711489	12	107711489	BTBD11	North shore	-0.06178503	0.00909393	0.00000000147	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12192749	chr7:17029795	7	17029795	-	Open sea	-0.069312	0.01021108	0.00000000151	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00622552	chr15:76016335	15	76016335	ODF3L1	Open sea	0.05533645	0.00817199	0.00000000162	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13027206	chr14:91866325	14	91866325	CCDC88C	Open sea	-0.03432397	0.00508738	0.00000000181	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22510074	chr7:71803123	7	71803123	CALN1	South shore	-0.08882622	0.01321412	0.00000000202	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23928512	chr17:79970192	17	79970192	ASPSCR1	South shelf	0.08369165	0.01249521	0.00000000225	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06458248	chr19:13117917	19	13117917	NFIX	North shelf	0.06464799	0.00967464	0.00000000242	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05581878	chr3:159886981	3	159886981	-	Open sea	-0.09692572	0.01452137	0.0000000025	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08468772	chr5:139174423	5	139174423	PSD2	North shore	0.04941544	0.0074095	0.00000000256	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14214856	chr10:36965362	10	36965362	-	Open sea	-0.08475796	0.01272489	0.00000000266	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14360917	chr17:45992122	17	45992122	SP2	Open sea	-0.07344868	0.01105532	0.00000000287	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00079023	chr5:139492535	5	139492535	PURA	North shore	0.03381696	0.00509558	0.00000000296	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12713583	chr19:940724	19	940724	ARID3A	Island	-0.08643107	0.01302417	0.00000000297	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05283597	chr3:52812410	3	52812410	ITIH1	Open sea	-0.06316959	0.00952045	0.00000000298	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01185345	chr13:99218287	13	99218287	STK24	Open sea	-0.04962072	0.00750943	0.00000000337	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11573518	chr7:73721031	7	73721031	CLIP2	South shore	-0.06659727	0.01009137	0.00000000349	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07651048	chr12:49735444	12	49735444	-	North shore	0.04756593	0.0072848	0.00000000477	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24474319	chr1:156671386	1	156671386	CRABP2	North shelf	0.03472416	0.00532555	0.00000000496	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14348967	chr4:10160060	4	10160060	-	Open sea	-0.11673967	0.01792326	0.00000000512	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13228442	chr22:41763512	22	41763512	TEF	Open sea	-0.03032711	0.00467411	0.00000000572	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25125453	chr20:12989844	20	12989844	SPTLC3	Open sea	-0.04932967	0.0076026	0.00000000594	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16103712	chr8:99023869	8	99023869	MATN2	Open sea	-0.07537388	0.01165034	0.00000000621	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19220719	chr10:77532329	10	77532329	-	Open sea	-0.0952405	0.01478454	0.00000000702	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14469684	chr9:138997380	9	138997380	-	South shelf	-0.04254428	0.00661412	0.00000000732	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22433862	chr1:28013341	1	28013341	-	Open sea	0.06744287	0.01048918	0.0000000074	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19169154	chr17:19287978	17	19287978	MFAP4	Open sea	-0.04102843	0.00638352	0.00000000748	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06687489	chr15:52587077	15	52587077	MYO5C	North shore	-0.07091306	0.01103456	0.00000000751	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19075787	chr2:105372087	2	105372087	-	Open sea	-0.12993711	0.02030254	0.00000000844	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17837526	chr5:172410489	5	172410489	ATP6V0E1	North shore	-0.04995223	0.00780514	0.00000000844	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00989249	chr5:177548398	5	177548398	N4BP3	Open sea	-0.05840654	0.00919511	0.0000000104	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01429256	chr17:17687834	17	17687834	RAI1	South shore	-0.04141608	0.00652284	0.0000000105	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13928759	chr10:95517382	10	95517382	LGI1	Open sea	0.09060621	0.01430326	0.0000000112	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11118235	chr3:50284010	3	50284010	GNAI2	Open sea	-0.03244183	0.0051273	0.0000000116	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19496364	chr8:94551463	8	94551463	-	Open sea	0.10227037	0.01616514	0.0000000116	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23534245	chr20:6751435	20	6751435	BMP2	South shore	0.08052836	0.01273055	0.0000000117	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14565465	chr9:74298933	9	74298933	TMEM2	Open sea	-0.06788227	0.01075071	0.0000000123	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13100137	chr1:37937945	1	37937945	-	North shore	-0.05928651	0.00939953	0.0000000127	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16356456	chr7:73720870	7	73720870	CLIP2	Island	-0.05369853	0.00855046	0.0000000143	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01108243	chr20:57594267	20	57594267	TUBB1	Open sea	-0.05616085	0.00894843	0.0000000145	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14398883	chr7:101398184	7	101398184	-	Open sea	-0.08510395	0.01358032	0.0000000151	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07262247	chr5:131593730	5	131593730	PDLIM4	Island	0.05525247	0.00884126	0.0000000163	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19764555	chr11:62315119	11	62315119	AHNAK	South shore	0.04041728	0.00647176	0.0000000166	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24059075	chr12:49688316	12	49688316	PRPH	North shore	0.04617028	0.00740051	0.0000000171	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22622440	chr17:18088359	17	18088359	ALKBH5	Island	-0.03937784	0.00632199	0.0000000179	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04340651	chr15:93617080	15	93617080	RGMA	Island	-0.05269294	0.00846341	0.0000000181	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25938530	chr3:52812367	3	52812367	ITIH1	Open sea	-0.1125406	0.01815583	0.0000000204	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24843346	chr8:142736091	8	142736091	-	South shore	-0.08837162	0.01427736	0.0000000212	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13544075	chr9:139644102	9	139644102	LCN6	South shelf	-0.0526325	0.00850725	0.0000000215	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26619671	chr16:89638625	16	89638625	-	North shelf	-0.0343634	0.0055661	0.0000000227	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05038216	chr2:29339091	2	29339091	CLIP4	South shore	-0.0581506	0.00943421	0.0000000237	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14483391	chr3:183749227	3	183749227	HTR3D	Open sea	0.07979737	0.01299422	0.0000000262	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02889774	chr8:21824555	8	21824555	XPO7	Open sea	-0.05989484	0.00980323	0.00000003	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27508620	chr7:21209725	7	21209725	-	Open sea	0.10083383	0.01663157	0.0000000367	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11321035	chr19:13944814	19	13944814	-	South shore	-0.03616033	0.00596348	0.0000000378	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12899065	chr22:19710163	22	19710163	GP1BB;SEPT5	Island	0.1616639	0.0267457	0.0000000398	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26686150	chr12:93637466	12	93637466	-	Open sea	-0.04519452	0.00748715	0.0000000412	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11614585	chr20:897050	20	897050	ANGPT4	Open sea	0.0285594	0.00473478	0.000000042	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04364695	chr8:40618425	8	40618425	ZMAT4	Open sea	-0.13475347	0.02235361	0.0000000427	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10554436	chr3:138666885	3	138666885	FOXL2;C3orf72	North shore	0.04426759	0.00733853	0.0000000433	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22114489	chr7:101398177	7	101398177	-	Open sea	-0.13119346	0.0218269	0.000000046	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09868299	chr11:69259957	11	69259957	-	South shore	0.03599263	0.00599378	0.0000000472	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00739778	chr17:2908023	17	2908023	RAP1GAP2	Open sea	-0.08781813	0.01462643	0.0000000474	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19592472	chr20:3052274	20	3052274	OXT	Island	-0.12275433	0.02049448	0.0000000504	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18147098	chr1:212688916	1	212688916	-	South shore	0.10824549	0.01812656	0.0000000544	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01593345	chr12:12932730	12	12932730	APOLD1	Open sea	-0.0823173	0.01380972	0.000000057	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18613390	chr22:19963423	22	19963423	ARVCF	North shelf	-0.06743525	0.01134337	0.0000000611	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12113316	chr8:37729089	8	37729089	RAB11FIP1	Open sea	-0.07848599	0.01320376	0.0000000613	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06388350	chr4:95334135	4	95334135	-	Open sea	-0.07345016	0.01235952	0.0000000616	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08871545	chr1:48559803	1	48559803	-	Open sea	-0.090454	0.0152448	0.0000000642	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21574271	chr4:96051461	4	96051461	BMPR1B	Open sea	-0.09010833	0.0152002	0.0000000656	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20327845	chr10:3138418	10	3138418	PFKP	Open sea	-0.09759513	0.0164728	0.0000000666	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13251842	chr22:46508469	22	46508469	MIRLET7A3;LOC400931;MIRLET7B	Open sea	0.09493071	0.0160239	0.0000000667	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16129526	chr14:69968273	14	69968273	FLJ44817	Open sea	0.05696925	0.00961943	0.0000000673	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11789885	chr19:11472731	19	11472731	LPPR2	North shore	0.04557213	0.00770323	0.0000000692	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00608540	chr5:180627973	5	180627973	TRIM7	North shelf	0.05580096	0.00944342	0.0000000713	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23279756	chr6:109159348	6	109159348	-	Open sea	-0.0942516	0.01595142	0.0000000714	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18017908	chr17:16394618	17	16394618	C17orf76	North shore	-0.06120869	0.01036291	0.000000072	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21480264	chr4:2137264	4	2137264	POLN	Open sea	-0.05714366	0.00968318	0.0000000736	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15920975	chr11:65194933	11	65194933	-	South shelf	-0.09181055	0.01557998	0.0000000764	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04099095	chr7:27278570	7	27278570	-	North shore	0.05363269	0.0091086	0.0000000779	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02389949	chr7:30176264	7	30176264	C7orf41	South shore	-0.0615408	0.01047369	0.0000000822	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11340260	chr17:4835476	17	4835476	GP1BA	Open sea	-0.04610945	0.00784747	0.0000000822	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17696044	chr11:70449316	11	70449316	SHANK2	Open sea	-0.12912717	0.02201766	0.0000000861	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00481600	chr15:65503829	15	65503829	CILP	Open sea	-0.04043275	0.00691482	0.0000000928	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01940273	chr2:233284934	2	233284934	-	Island	0.05029649	0.00860927	0.0000000948	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10057879	chr17:30591837	17	30591837	RHBDL3	North shore	0.0515573	0.00883263	0.0000000969	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25426302	chr6:32120826	6	32120826	PPT2;PRRT1	North shore	0.09963667	0.01708462	0.000000099	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00646396	chr1:26482755	1	26482755	-	Open sea	0.04045667	0.00694381	0.000000101	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05360958	chr12:15038440	12	15038440	MGP	Open sea	-0.08690399	0.01491162	0.000000101	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11756095	chr1:32410614	1	32410614	-	Island	-0.06425037	0.01103496	0.000000103	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20379593	chr11:65198023	11	65198023	-	Open sea	-0.06673774	0.01146383	0.000000104	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22642495	chr19:10197856	19	10197856	C19orf66	Island	-0.05596899	0.00962022	0.000000105	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09453760	chr7:47693630	7	47693630	C7orf65	Open sea	-0.07958096	0.01372141	0.000000114	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11529819	chr1:27695677	1	27695677	FCN3	South shelf	-0.04472227	0.00771404	0.000000115	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18028767	chr11:859873	11	859873	TSPAN4	South shore	-0.04288383	0.00742223	0.000000125	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23458168	chr19:30864867	19	30864867	ZNF536	North shore	0.14670898	0.02539805	0.000000125	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01109135	chr14:105532252	14	105532252	GPR132	Open sea	-0.0313399	0.00545196	0.000000141	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26683398	chr5:179220589	5	179220589	LTC4S	North shelf	-0.04941995	0.00862056	0.000000151	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03602233	chr16:75144040	16	75144040	ZNRF1	Open sea	-0.02913905	0.00508704	0.000000154	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08012287	chr11:66315298	11	66315298	ACTN3	South shore	0.04511499	0.00788059	0.000000156	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22190721	chr16:68269295	16	68269295	ESRP2	Island	0.10083839	0.01762134	0.000000158	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17986992	chr1:159825761	1	159825761	VSIG8;C1orf204	South shore	0.07788251	0.01362456	0.000000162	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16240781	chr2:45234379	2	45234379	SIX2	North shore	0.0604445	0.0105846	0.000000166	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27078140	chr2:175205821	2	175205821	-	Island	0.0382869	0.00671279	0.000000171	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07638500	chr3:123371420	3	123371420	MYLK	Open sea	0.04820841	0.00845713	0.000000173	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06618629	chr17:4437077	17	4437077	SPNS2	North shelf	-0.08882359	0.01561622	0.000000183	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01242676	chr17:13413600	17	13413600	HS3ST3A1	Open sea	-0.0476758	0.00839692	0.000000191	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03785076	chr2:241936915	2	241936915	SNED1	North shore	-0.0549821	0.00969163	0.000000194	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24279744	chr3:10408402	3	10408402	ATP2B2	Open sea	0.06283466	0.01108404	0.000000198	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13537156	chr17:72951218	17	72951218	C17orf28	Open sea	0.06116452	0.01079312	0.000000199	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04494800	chr6:149775853	6	149775853	ZC3H12D	North shore	-0.06375875	0.01126353	0.000000205	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13008538	chr7:3083741	7	3083741	CARD11	Open sea	-0.0235077	0.0041553	0.000000208	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22109240	chr2:201374010	2	201374010	KCTD18	North shore	-0.04023077	0.0071204	0.000000214	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04621728	chr2:234934131	2	234934131	-	Open sea	-0.08268428	0.01464586	0.000000218	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21785067	chr1:54587182	1	54587182	-	North shore	-0.04883518	0.00865392	0.00000022	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14434062	chr15:70767419	15	70767419	-	Open sea	-0.05350569	0.00948253	0.000000221	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04322572	chr10:43447618	10	43447618	-	Open sea	0.07448524	0.01320575	0.000000223	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15527674	chr11:61248474	11	61248474	C11orf66	Open sea	0.04337499	0.00769561	0.000000227	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08370173	chr17:75537444	17	75537444	-	Open sea	0.06720699	0.01193634	0.000000233	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13357602	chr6:30655720	6	30655720	KIAA1949	South shore	-0.05540419	0.00985908	0.000000243	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12919119	chr3:37904293	3	37904293	CTDSPL	South shore	-0.03218957	0.00573405	0.000000249	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24448421	chr12:68737061	12	68737061	-	Open sea	-0.06037625	0.01075674	0.00000025	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03699958	chr7:73892704	7	73892704	GTF2IRD1	North shelf	-0.03230375	0.00575559	0.000000251	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15346781	chr2:7017571	2	7017571	RSAD2	Open sea	-0.06466726	0.01153189	0.000000256	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03985801	chr1:202182603	1	202182603	LGR6	North shore	0.06248108	0.01116069	0.000000266	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02912379	chr1:145054067	1	145054067	PDE4DIP	Open sea	-0.04504064	0.00806137	0.000000279	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13067635	chr1:5526684	1	5526684	-	Open sea	-0.02850245	0.0051028	0.000000281	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11229399	chr1:228689056	1	228689056	-	Open sea	-0.05403027	0.00967466	0.000000282	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13626632	chr9:124131165	9	124131165	STOM	North shore	-0.08575048	0.01535585	0.000000282	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15442737	chr8:141370229	8	141370229	TRAPPC9	Open sea	-0.12112314	0.02169145	0.000000283	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09598552	chr10:73417893	10	73417893	CDH23	Open sea	0.04968093	0.00890052	0.000000285	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02854922	chr1:144930964	1	144930964	PDE4DIP	North shore	-0.05401528	0.00968298	0.000000289	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05922714	chr16:48537907	16	48537907	-	Open sea	-0.07192452	0.01289462	0.00000029	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05350293	chr16:89119002	16	89119002	-	Island	-0.11214653	0.02012992	0.000000298	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00944421	chr16:68269483	16	68269483	ESRP2	Island	0.12067886	0.02167104	0.000000301	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01890836	chr17:17055584	17	17055584	MPRIP	Open sea	-0.06095719	0.01094794	0.000000302	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24673600	chr14:76005929	14	76005929	BATF	Open sea	-0.03793619	0.00681463	0.000000311	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07706695	chr1:111179008	1	111179008	-	Open sea	-0.07383821	0.01329127	0.000000319	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14292619	chr12:75784617	12	75784617	GLIPR1L2	North shore	-0.07754012	0.01396216	0.000000321	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05727149	chr16:75375801	16	75375801	CFDP1	Open sea	0.07528254	0.01357632	0.000000333	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26700215	chr8:67070006	8	67070006	TRIM55	Open sea	-0.04029582	0.00727033	0.000000336	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05228408	chr1:11865352	1	11865352	CLCN6;MTHFR	North shore	-0.04285113	0.00774007	0.000000345	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03193328	chr7:65746852	7	65746852	TPST1	Open sea	-0.05354127	0.00967351	0.000000347	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12374579	chr17:79970313	17	79970313	ASPSCR1	South shelf	0.06555997	0.011846	0.000000348	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15513620	chr1:120174873	1	120174873	ZNF697	Open sea	-0.03144885	0.00568443	0.000000351	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25560398	chr2:233252170	2	233252170	ECEL1P2	Island	0.10192827	0.01844998	0.000000362	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27015931	chr16:22012404	16	22012404	C16orf65	Open sea	-0.02203165	0.0039875	0.000000362	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13129046	chr10:71389696	10	71389696	C10orf35	North shore	-0.02935287	0.00532497	0.000000382	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22204103	chr4:41540115	4	41540115	LIMCH1	Open sea	-0.04125942	0.00749862	0.000000398	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19049607	chr12:12764333	12	12764333	CREBL2	North shore	-0.02789885	0.00507286	0.000000402	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06396119	chr13:49792767	13	49792767	-	North shore	0.10635678	0.01934557	0.000000405	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05736186	chr11:7633488	11	7633488	PPFIBP2	Open sea	0.05096238	0.00927323	0.000000409	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10422709	chr15:53083978	15	53083978	-	South shore	0.07646941	0.013919	0.000000412	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23075506	chr1:212688997	1	212688997	-	South shore	0.08263587	0.01505424	0.00000042	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07447742	chr13:49793170	13	49793170	MLNR	North shore	0.10529852	0.01919407	0.000000426	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18365406	chr19:11472110	19	11472110	LPPR2	Island	0.12045024	0.02198644	0.000000439	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23541926	chr3:155422092	3	155422092	PLCH1	Open sea	-0.03224953	0.00588694	0.00000044	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06850526	chr17:79269886	17	79269886	SLC38A10	South shore	-0.05092077	0.00929986	0.000000445	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14120215	chr12:113841668	12	113841668	SDS	Open sea	-0.04488679	0.00820136	0.000000449	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03684807	chr22:46457384	22	46457384	-	Island	0.10425604	0.01905672	0.000000453	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04908588	chr1:8229825	1	8229825	-	Open sea	-0.08180939	0.01497196	0.000000466	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00855901	chr1:79085765	1	79085765	IFI44L	Open sea	-0.06836628	0.01251871	0.000000472	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00873517	chr8:136511832	8	136511832	KHDRBS3	Open sea	-0.03633211	0.00666172	0.000000487	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17654970	chr2:163027484	2	163027484	FAP	Open sea	-0.03323418	0.00611188	0.00000052	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14150727	chr1:202182417	1	202182417	LGR6	North shore	0.0714941	0.01315129	0.000000523	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15453278	chr11:67134607	11	67134607	CLCF1;LOC100130987	Open sea	-0.03209863	0.00590913	0.000000533	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14830371	chr8:25991602	8	25991602	-	Open sea	-0.07720905	0.01422205	0.00000054	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04819580	chr7:150635526	7	150635526	-	Open sea	-0.06665062	0.01228586	0.000000548	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10533103	chr1:212688961	1	212688961	-	South shore	0.0780569	0.01440924	0.000000567	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02747950	chr15:63526883	15	63526883	RAB8B	Open sea	-0.06924838	0.01278426	0.000000568	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03065175	chr4:155661758	4	155661758	-	Island	0.1465659	0.02708464	0.00000058	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04322363	chr3:159757071	3	159757071	-	South shore	-0.03928925	0.00726151	0.000000582	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07858728	chr10:124319791	10	124319791	DMBT1	Open sea	-0.06653686	0.01229936	0.000000584	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17633234	chr15:93617065	15	93617065	RGMA	Island	-0.03820866	0.00707069	0.000000599	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00336149	chr3:53700195	3	53700195	CACNA1D	Open sea	-0.06681149	0.01238108	0.000000618	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16824126	chr22:41626394	22	41626394	CHADL;L3MBTL2	Open sea	-0.04780479	0.00886046	0.00000062	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20236750	chr10:95516908	10	95516908	LGI1	Open sea	0.06269032	0.0116334	0.000000637	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05726109	chr22:19709755	22	19709755	SEPT5;GP1BB	Island	0.12983457	0.02411418	0.000000649	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27529555	chr1:205325859	1	205325859	KLHDC8A	Open sea	0.05963164	0.01108242	0.000000659	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24024661	chr19:1074425	19	1074425	HMHA1	North shore	-0.06858582	0.01275347	0.000000667	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21874213	chr5:139229292	5	139229292	NRG2	South shore	0.03688054	0.00686174	0.000000675	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14536881	chr9:36740105	9	36740105	-	South shore	-0.02605611	0.00485134	0.000000686	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15194163	chr6:32118213	6	32118213	PRRT1	Island	0.0271272	0.0050602	0.000000715	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20654468	chr11:58342997	11	58342997	LPXN	North shelf	-0.03880527	0.00723898	0.000000716	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18473686	chr22:33427086	22	33427086	SYN3	Open sea	0.0478943	0.00893635	0.000000719	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01558110	chr22:50607681	22	50607681	PANX2	North shore	0.06263505	0.01169938	0.000000736	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17896927	chr15:93617030	15	93617030	RGMA	Island	-0.03823977	0.00714786	0.000000748	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15657704	chr10:116164955	10	116164955	AFAP1L2	South shore	0.0704364	0.01317138	0.000000755	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07504763	chr1:198575077	1	198575077	-	Open sea	-0.05465482	0.01023076	0.000000772	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24883498	chr19:18264771	19	18264771	PIK3R2	North shore	-0.04080328	0.00764069	0.000000778	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16165575	chr1:68824389	1	68824389	-	Open sea	-0.07347135	0.01376156	0.000000783	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02345399	chr11:65195039	11	65195039	-	South shelf	-0.05375655	0.01007623	0.000000795	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14837974	chr14:21110908	14	21110908	OR6S1	Open sea	0.06882145	0.01290024	0.000000796	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20026178	chr6:2768054	6	2768054	WRNIP1	South shore	-0.09661328	0.01811216	0.000000798	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27137887	chr11:46513635	11	46513635	AMBRA1	Open sea	-0.05782651	0.01084561	0.000000806	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18533225	chr22:50986813	22	50986813	KLHDC7B	Island	0.04902308	0.00920283	0.000000822	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22364219	chr1:16714091	1	16714091	C1orf144	Open sea	-0.11978599	0.02249785	0.000000831	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10536276	chr2:113956344	2	113956344	PSD4;LOC440839	Island	-0.07421365	0.01393897	0.000000831	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02626208	chr17:34989377	17	34989377	-	Open sea	0.0743194	0.01396823	0.000000844	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06872257	chr8:16859636	8	16859636	FGF20	South shore	0.04827044	0.00907378	0.000000847	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10549018	chr10:98176740	10	98176740	TLL2	Open sea	-0.04432484	0.00833462	0.000000852	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01710147	chr1:207233419	1	207233419	PFKFB2	Open sea	-0.03780693	0.00711721	0.000000874	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26907472	chr16:69006828	16	69006828	TMCO7	Open sea	0.05068104	0.00954294	0.000000878	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07076751	chr6:30647539	6	30647539	KIAA1949	Open sea	-0.03771783	0.0071156	0.000000915	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06722121	chr17:72934409	17	72934409	OTOP3	South shore	0.05632329	0.01063193	0.000000927	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23062810	chr7:73720808	7	73720808	CLIP2	Island	-0.04788935	0.00905691	0.000000966	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15972560	chr4:82136940	4	82136940	-	South shore	-0.01761213	0.00333096	0.000000967	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25663970	chr12:58024478	12	58024478	B4GALNT1	North shore	0.03435866	0.0064989	0.000000969	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19843457	chr12:132288611	12	132288611	-	South shelf	-0.06300428	0.01192158	0.000000977	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10905180	chr11:4701824	11	4701824	OR51E2	Open sea	-0.15052459	0.02848481	0.000000979	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20996314	chr8:21989292	8	21989292	HR	South shore	0.06306009	0.01195119	0.00000101	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01308549	chr21:38592416	21	38592416	DSCR9	North shore	-0.04080967	0.0077435	0.00000104	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20075683	chr5:132083910	5	132083910	CCNI2	Island	0.04866312	0.00923973	0.00000105	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12131208	chr17:58499700	17	58499700	C17orf64	South shore	0.09127282	0.01733978	0.00000107	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08813888	chr2:662396	2	662396	-	South shore	-0.05725743	0.01088376	0.00000108	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02211160	chr6:31761076	6	31761076	VARS	North shelf	-0.02331273	0.0044388	0.00000112	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25035376	chr12:57943261	12	57943261	KIF5A	North shore	0.06585039	0.01253748	0.00000112	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12828729	chr5:134823969	5	134823969	-	North shore	0.04540426	0.00864808	0.00000113	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06271237	chr6:144263369	6	144263369	PLAGL1	Open sea	-0.04361331	0.0083127	0.00000114	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04504205	chr20:45946429	20	45946429	ZMYND8;LOC100131496	Open sea	-0.04275935	0.00815049	0.00000114	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02551745	chr3:156809115	3	156809115	-	South shelf	0.05961138	0.01137219	0.00000116	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00595243	chr6:133137893	6	133137893	RPS12;SNORD100;SNORA33	South shelf	-0.05937293	0.01134432	0.0000012	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22508782	chr3:49028594	3	49028594	P4HTM	South shore	-0.03535555	0.00676915	0.00000126	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09427311	chr9:129885730	9	129885730	ANGPTL2;RALGPS1	Open sea	-0.05164682	0.00988985	0.00000126	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10695490	chr19:49659299	19	49659299	HRC	North shore	0.04548775	0.00870842	0.00000126	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04970434	chr17:4838096	17	4838096	GP1BA	Open sea	-0.04622843	0.00885373	0.00000127	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16588163	chr3:190251464	3	190251464	IL1RAP	Open sea	-0.06637999	0.01271919	0.00000128	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06942183	chr17:46622607	17	46622607	HOXB2	South shore	-0.06052406	0.01163426	0.00000137	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02186444	chr17:73120977	17	73120977	ARMC7	North shelf	-0.04255455	0.00818224	0.00000138	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12076915	chr19:42430253	19	42430253	-	North shore	0.05298764	0.01019777	0.0000014	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22726349	chr1:2990678	1	2990678	PRDM16	Island	-0.06977575	0.01345209	0.00000146	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14634687	chr17:47094252	17	47094252	IGF2BP1	South shelf	-0.05598194	0.01079527	0.00000146	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20717932	chr17:38226278	17	38226278	THRA	Open sea	-0.0368989	0.00710839	0.00000146	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03457027	chr8:94573377	8	94573377	-	Open sea	0.03466477	0.00669129	0.00000149	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06648759	chr13:40892751	13	40892751	-	Open sea	-0.06387126	0.01233212	0.0000015	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12940522	chr20:62073153	20	62073153	KCNQ2	North shelf	-0.03517383	0.00679277	0.00000151	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13740339	chr9:97400757	9	97400757	FBP1	North shore	-0.0481139	0.00929575	0.00000152	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24886770	chr19:22018538	19	22018538	ZNF43	North shore	-0.0056039	0.00108253	0.00000152	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03443331	chr2:97302668	2	97302668	KIAA1310	North shore	-0.04876297	0.0094241	0.00000153	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11789681	chr15:74046708	15	74046708	-	South shore	0.04227096	0.00816742	0.00000153	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04731988	chr20:3051954	20	3051954	OXT	North shore	-0.07683174	0.01485798	0.00000155	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27191921	chr22:43042910	22	43042910	CYB5R3	North shelf	-0.03665202	0.00708762	0.00000155	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06832677	chr2:119976764	2	119976764	-	Open sea	-0.08284746	0.01602438	0.00000156	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11989942	chr17:80067146	17	80067146	CCDC57	Open sea	0.03244422	0.00627776	0.00000157	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13555772	chr11:705748	11	705748	EPS8L2	North shore	-0.02792395	0.00541183	0.00000163	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22935450	chr17:38465393	17	38465393	RARA	Open sea	0.02744661	0.00532188	0.00000164	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16348158	chr1:3036916	1	3036916	PRDM16	North shore	-0.08741671	0.01696349	0.00000167	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00466249	chr17:79269884	17	79269884	SLC38A10	South shore	-0.05810199	0.01127935	0.00000168	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11666770	chr19:42430910	19	42430910	-	North shore	0.07884344	0.01531272	0.0000017	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19270739	chr1:1368846	1	1368846	-	North shore	-0.03667913	0.00712604	0.00000171	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12513481	chr17:46507830	17	46507830	SKAP1	South shore	-0.04124788	0.00801325	0.00000171	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03476007	chr4:143768727	4	143768727	INPP4B	South shore	-0.06447608	0.01253353	0.00000173	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17610169	chr11:10750973	11	10750973	-	Open sea	0.08275654	0.01609603	0.00000175	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16874077	chr7:127238538	7	127238538	FSCN3	Open sea	0.05379798	0.01047343	0.00000179	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01097408	chr1:228073635	1	228073635	-	North shore	-0.05233204	0.01019798	0.00000182	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00383763	chr1:202682124	1	202682124	-	South shelf	0.06503819	0.01267798	0.00000183	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22117805	chr11:36422455	11	36422455	PRR5L	Open sea	-0.08971292	0.01749175	0.00000184	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25969122	chr11:119630362	11	119630362	-	Open sea	-0.07204761	0.01404724	0.00000184	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07599979	chr21:38592612	21	38592612	DSCR9	North shore	-0.08168374	0.01592634	0.00000184	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03012028	chr7:30739812	7	30739812	-	Open sea	0.04248709	0.00830078	0.00000192	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20849025	chr11:58981043	11	58981043	MPEG1	Open sea	-0.0289944	0.00566457	0.00000192	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07824422	chr11:2555406	11	2555406	KCNQ1	Island	-0.02574536	0.00503488	0.00000196	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07381930	chr10:99608915	10	99608915	GOLGA7B	North shore	-0.03762847	0.0073613	0.00000198	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16371538	chr1:37940813	1	37940813	ZC3H12A	South shore	-0.03779547	0.00739974	0.00000201	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04483289	chr17:46507857	17	46507857	SKAP1	South shore	-0.05348997	0.01047741	0.00000203	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01121603	chr2:242005101	2	242005101	SNED1	Island	0.06678858	0.01309264	0.00000206	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01190666	chr20:62204908	20	62204908	PRIC285	North shore	-0.03369131	0.00661054	0.0000021	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13492133	chr1:183516266	1	183516266	SMG7	Open sea	0.04674781	0.00918483	0.00000216	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26096752	chr5:66530611	5	66530611	-	Open sea	-0.05286803	0.01038768	0.00000216	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18681014	chr14:105660876	14	105660876	-	North shore	-0.07430166	0.01460864	0.00000219	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22400703	chr2:68545995	2	68545995	CNRIP1	North shore	0.07746093	0.01525383	0.00000226	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21211253	chr5:139168323	5	139168323	-	South shore	0.04518199	0.00890539	0.0000023	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22965561	chr10:13046134	10	13046134	-	South shelf	-0.06740925	0.01328767	0.00000231	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12063580	chr14:105783627	14	105783627	PACS2	South shore	-0.04647902	0.00916291	0.00000231	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00491255	chr16:58019984	16	58019984	TEPP	Island	0.10915027	0.02151427	0.00000231	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13725599	chr20:3052262	20	3052262	OXT	Island	-0.02719188	0.0053433	0.00000233	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14823389	chr7:101398152	7	101398152	-	Open sea	-0.10587409	0.02089078	0.00000236	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15540623	chr12:52388221	12	52388221	ACVR1B	Open sea	-0.07677349	0.0151562	0.00000238	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04914013	chr1:7763567	1	7763567	CAMTA1	North shore	0.04828174	0.00953446	0.00000239	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05374982	chr1:31376412	1	31376412	SDC3	Open sea	0.03951074	0.00780277	0.0000024	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12646820	chr6:13924406	6	13924406	RNF182	North shore	0.08148722	0.01610918	0.00000245	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12349832	chr17:72951240	17	72951240	C17orf28	Open sea	0.04460102	0.00882026	0.00000247	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12635937	chr4:81184925	4	81184925	-	North shelf	0.0351474	0.00695446	0.00000249	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26825650	chr1:204182957	1	204182957	GOLT1A	Open sea	-0.02383609	0.00471965	0.00000253	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18272538	chr1:210425852	1	210425852	-	Open sea	0.03905408	0.00773422	0.00000254	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21403543	chr10:91061583	10	91061583	IFIT2	Open sea	-0.01406558	0.00278594	0.00000254	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26660631	chr1:47015494	1	47015494	KNCN	Open sea	0.02958263	0.00586333	0.00000258	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22017733	chr5:162936453	5	162936453	MAT2B	South shelf	-0.09534282	0.01889649	0.00000258	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26446803	chr11:1807232	11	1807232	-	Open sea	0.06184771	0.01226739	0.00000262	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17180284	chr13:31783983	13	31783983	B3GALTL	Open sea	-0.06440435	0.01277384	0.00000262	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24227371	chr11:82718527	11	82718527	RAB30	Open sea	-0.05311248	0.01053954	0.00000264	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10239319	chr4:6073656	4	6073656	JAKMIP1	Open sea	-0.05609207	0.01114184	0.0000027	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22398226	chr4:155662217	4	155662217	-	North shore	0.04589224	0.00911685	0.0000027	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02630477	chr1:40388223	1	40388223	-	Open sea	0.06308338	0.01253784	0.00000273	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20306574	chr14:24601499	14	24601499	FITM1	Island	-0.09350788	0.01859747	0.00000277	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10053507	chr1:15307522	1	15307522	KIAA1026	Open sea	0.04837225	0.00962848	0.00000281	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06108383	chr6:32120899	6	32120899	PPT2;PRRT1	North shore	0.06189479	0.01232354	0.00000283	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00587472	chr2:6952860	2	6952860	-	Open sea	-0.08793033	0.01752351	0.00000288	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03192231	chr3:35786480	3	35786480	ARPP-21	Open sea	0.03477012	0.00693785	0.00000295	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00547103	chr4:159092089	4	159092089	FAM198B	Open sea	-0.05434374	0.01084736	0.00000297	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24060542	chr2:74732471	2	74732471	PCGF1	North shore	0.03756802	0.0074996	0.00000298	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13903421	chr2:219738714	2	219738714	WNT6	Island	0.0299751	0.00598599	0.000003	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03941587	chr4:123747634	4	123747634	FGF2	North shore	0.04914798	0.00980874	0.00000302	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12613020	chr5:134881662	5	134881662	-	South shore	0.05092587	0.01017223	0.00000302	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13280041	chr6:138866865	6	138866865	NHSL1	Open sea	0.06619778	0.01322646	0.00000303	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23839159	chr1:43281794	1	43281794	CCDC23;ERMAP	North shore	-0.05588736	0.0111781	0.0000031	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03218374	chr20:896981	20	896981	ANGPT4	Open sea	0.02584371	0.00516676	0.00000312	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11196848	chr8:16859833	8	16859833	FGF20	South shore	0.0902906	0.01807325	0.00000315	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27210390	chr17:52978583	17	52978583	TOM1L1	South shore	0.06396828	0.01280672	0.00000316	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09120934	chr11:120187999	11	120187999	POU2F3	Open sea	0.0497102	0.00996858	0.00000326	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11405695	chr1:1384091	1	1384091	ATAD3C	Open sea	0.05179071	0.01038706	0.00000327	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18133966	chr12:120765718	12	120765718	PLA2G1B	Open sea	0.05648746	0.01133999	0.00000333	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04411893	chr3:185300709	3	185300709	-	North shelf	-0.02298905	0.00461526	0.00000334	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06000878	chr11:122051193	11	122051193	LOC399959	Open sea	-0.06123621	0.01229364	0.00000334	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09022808	chr22:30960857	22	30960857	GAL3ST1	Open sea	0.05846699	0.01175378	0.00000343	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09137533	chr22:46469091	22	46469091	-	South shore	-0.09632878	0.01936849	0.00000344	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17768691	chr12:14720948	12	14720948	PLBD1	Island	0.04776076	0.00962214	0.00000358	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16448636	chr7:21209509	7	21209509	-	Open sea	0.10123681	0.0204026	0.0000036	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08369079	chr6:106551623	6	106551623	PRDM1	Open sea	-0.03552018	0.00716076	0.00000362	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19727499	chr19:49628740	19	49628740	PPFIA3	North shelf	0.03794163	0.00765214	0.00000365	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19240637	chr2:7172297	2	7172297	RNF144A	Island	-0.0502588	0.01014479	0.00000371	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00049440	chr9:73026643	9	73026643	KLF9	North shore	-0.06031026	0.01217716	0.00000373	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07471614	chr8:125855152	8	125855152	-	Open sea	0.04399725	0.00888825	0.00000377	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26267561	chr20:3052224	20	3052224	OXT	Island	-0.07708025	0.01557704	0.0000038	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01143454	chr20:2795601	20	2795601	C20orf141;LOC100288797	Open sea	-0.06703783	0.01354981	0.00000381	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24143137	chr10:103995782	10	103995782	PITX3	South shelf	0.03180778	0.00642924	0.00000382	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08994060	chr10:6214026	10	6214026	PFKFB3	Open sea	-0.09981446	0.02018724	0.00000386	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21542881	chr19:39754717	19	39754717	-	North shore	0.06068762	0.0122817	0.00000391	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01363662	chr15:76016306	15	76016306	ODF3L1	Open sea	0.05232913	0.01059403	0.00000394	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13752545	chr9:38071235	9	38071235	-	South shore	-0.06107177	0.01236538	0.00000395	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05857996	chr20:2675418	20	2675418	EBF4	South shore	0.16447737	0.03334011	0.00000403	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13562284	chr11:32110323	11	32110323	-	North shelf	-0.03473761	0.00704446	0.00000407	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25512537	chr17:76250053	17	76250053	-	North shore	-0.075524	0.01532519	0.00000412	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18144742	chr14:107252125	14	107252125	-	Open sea	-0.03308414	0.00671598	0.00000415	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25736663	chr1:234350875	1	234350875	SLC35F3	South shore	0.05907137	0.01199702	0.00000419	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01556246	chr8:8204802	8	8204802	PRAGMIN	Open sea	0.0222832	0.00452808	0.00000423	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17571266	chr12:54763211	12	54763211	ZNF385A	Island	0.10237819	0.02080319	0.00000423	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13123009	chr6:31681882	6	31681882	LY6G6E;LY6G6D	Open sea	0.03035987	0.0061752	0.00000431	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02129885	chr20:30218466	20	30218466	-	North shore	-0.05137337	0.01046159	0.00000441	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22505962	chr3:45067627	3	45067627	CLEC3B	Open sea	-0.04944703	0.01006979	0.00000442	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13712023	chr5:141060575	5	141060575	ARAP3	Open sea	0.03640048	0.00741296	0.00000442	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16455894	chr17:16966893	17	16966893	MPRIP	Open sea	-0.03760617	0.00766296	0.00000447	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22543992	chr7:81399680	7	81399680	HGF	Open sea	-0.03088444	0.00629415	0.00000448	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27217742	chr4:3365280	4	3365280	RGS12	Island	0.04540313	0.00925355	0.00000449	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07391913	chr3:56818298	3	56818298	ARHGEF3	Open sea	-0.05199437	0.01060078	0.00000452	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15811668	chr14:101366368	14	101366368	MEG8	Open sea	-0.02946115	0.00600823	0.00000454	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13584882	chr10:74836656	10	74836656	P4HA1	Open sea	-0.05717604	0.0116642	0.00000457	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14766769	chr9:125874000	9	125874000	MIR600;C9orf45	Open sea	-0.02716209	0.00554487	0.00000463	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18584012	chr8:82644373	8	82644373	CHMP4C	North shore	-0.04958537	0.01012321	0.00000464	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14330585	chr9:3180869	9	3180869	-	North shore	-0.08911506	0.01821125	0.00000473	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19080839	chr7:150939592	7	150939592	SMARCD3	North shelf	0.0502621	0.01027405	0.00000475	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21645554	chr11:111169473	11	111169473	C11orf93;C11orf92	Island	0.04383765	0.00896077	0.00000475	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10584024	chr1:84234998	1	84234998	-	Open sea	-0.09375178	0.01917336	0.0000048	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02153528	chr12:56618648	12	56618648	OBFC2B	South shore	-0.02742475	0.00561265	0.00000486	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27516100	chr6:30624520	6	30624520	DHX16	Open sea	0.03712839	0.00760703	0.00000497	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27133224	chr15:75138105	15	75138105	SCAMP2	South shelf	-0.02790855	0.00572	0.000005	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11945297	chr8:102514634	8	102514634	GRHL2	Open sea	0.05071119	0.01039602	0.00000502	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03254465	chr1:3240227	1	3240227	PRDM16	Island	-0.07828742	0.01605375	0.00000505	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06046912	chr2:55747633	2	55747633	CCDC104	South shore	-0.03522455	0.00722832	0.00000512	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24872692	chr22:25156026	22	25156026	PIWIL3	North shelf	0.03483733	0.00714616	0.00000516	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03698343	chr9:139921892	9	139921892	ABCA2;C9orf139	North shore	-0.02848402	0.00585859	0.00000535	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23444264	chr10:72219751	10	72219751	-	South shore	0.08364429	0.01720537	0.00000536	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13092575	chr17:25786524	17	25786524	-	South shelf	0.04214576	0.00866915	0.00000536	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14147151	chr9:138948000	9	138948000	NACC2	South shelf	-0.05157133	0.01062163	0.00000549	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27516568	chr4:122686667	4	122686667	TMEM155;LOC100192379	South shore	0.05546019	0.01143835	0.00000564	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01131866	chr5:61601529	5	61601529	KIF2A	North shore	-0.03006581	0.00620176	0.00000565	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12342675	chr10:60411127	10	60411127	BICC1	Open sea	-0.08505526	0.01754632	0.00000566	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09233395	chr8:116678582	8	116678582	TRPS1	North shore	-0.06065699	0.01251354	0.00000567	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19837174	chr10:6389707	10	6389707	-	Open sea	-0.04816107	0.00994598	0.00000578	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27066989	chr13:51640362	13	51640362	GUCY1B2	Open sea	-0.03661412	0.00756171	0.00000579	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12913778	chr21:43945212	21	43945212	SLC37A1	Open sea	-0.05890342	0.01217759	0.0000059	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21954370	chr15:45018720	15	45018720	-	Open sea	-0.05243096	0.0108418	0.00000593	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07820189	chr1:183149515	1	183149515	-	Open sea	-0.05261828	0.010889	0.00000601	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00707741	chr2:242294482	2	242294482	FARP2	North shore	-0.05547016	0.01147961	0.00000602	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03841312	chr22:46508486	22	46508486	MIRLET7A3;LOC400931;MIRLET7B	Open sea	0.05016639	0.01038308	0.00000603	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16884222	chr11:65191531	11	65191531	NEAT1	South shore	-0.02708317	0.00560674	0.00000606	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07554046	chr11:15933403	11	15933403	-	Open sea	-0.04633365	0.00959287	0.00000607	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24940230	chr11:8046101	11	8046101	-	Open sea	0.05591121	0.01158703	0.00000618	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07945335	chr17:41924478	17	41924478	CD300LG	Open sea	0.04022614	0.00833969	0.00000622	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24119717	chr5:139488731	5	139488731	-	South shore	0.05908494	0.01225268	0.00000625	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17373759	chr11:76265321	11	76265321	-	Open sea	-0.04707992	0.00977295	0.00000637	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12700271	chr6:30458237	6	30458237	HLA-E	South shore	-0.02166806	0.0045025	0.0000065	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02331649	chr3:52926322	3	52926322	TMEM110	Open sea	-0.06981129	0.01450795	0.00000651	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11793783	chr5:176103447	5	176103447	-	North shelf	0.04690614	0.00975288	0.00000658	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02160608	chr2:113956634	2	113956634	PSD4;LOC440839	Island	-0.03279758	0.00682141	0.00000661	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24277586	chr3:52099561	3	52099561	C3orf74	Open sea	-0.0416236	0.00866074	0.00000666	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05922563	chr17:40611593	17	40611593	ATP6V0A1	South shore	-0.06377105	0.01327883	0.00000676	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02426464	chr17:1481305	17	1481305	SLC43A2	South shelf	-0.02122009	0.00441886	0.00000677	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01505275	chr11:4628823	11	4628823	TRIM68	North shore	-0.04252228	0.00885848	0.00000682	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26129353	chr18:55316927	18	55316927	ATP8B1	South shore	-0.05810881	0.01210596	0.00000682	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00124095	chr3:72305082	3	72305082	-	Open sea	-0.04387853	0.00914701	0.0000069	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07052568	chr19:13116804	19	13116804	NFIX	South shelf	0.06011938	0.01253581	0.00000694	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25596082	chr10:43626561	10	43626561	-	Open sea	0.04930535	0.01029002	0.00000705	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01245966	chr8:132053823	8	132053823	ADCY8	Island	-0.00864818	0.00180497	0.00000706	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20122635	chr15:93616950	15	93616950	RGMA	Island	-0.03004924	0.00627414	0.00000711	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14867085	chr11:17623131	11	17623131	-	Open sea	0.06892904	0.01441117	0.00000729	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02466947	chr5:87969157	5	87969157	LOC645323	North shore	0.02718703	0.0056874	0.00000737	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04367503	chr19:13121571	19	13121571	NFIX	Island	0.02455695	0.00513836	0.0000074	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24492058	chr1:12203751	1	12203751	TNFRSF8	Open sea	-0.0293792	0.00614917	0.00000744	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08470180	chr5:134181226	5	134181226	C5orf24	North shore	-0.06928685	0.01450927	0.00000751	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04113258	chr16:17527041	16	17527041	XYLT1	Open sea	-0.03592411	0.0075236	0.00000753	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06134964	chr3:52812033	3	52812033	ITIH1	Open sea	-0.05414166	0.01134736	0.00000763	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17892169	chr17:7452644	17	7452644	TNFSF12;TNFSF12-TNFSF13	Island	-0.03038461	0.00637152	0.00000771	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24152179	chr22:19750918	22	19750918	TBX1	North shore	0.07694095	0.01613487	0.00000771	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07108443	chr4:74968350	4	74968350	-	South shelf	-0.05470172	0.01147557	0.00000777	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16677448	chr19:36004699	19	36004699	DMKN	Open sea	0.07206191	0.01513454	0.00000793	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12930882	chr5:37825585	5	37825585	GDNF	Open sea	0.06355873	0.0133524	0.00000798	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18855080	chr1:172748189	1	172748189	-	Open sea	-0.05406458	0.01136032	0.00000801	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18951718	chr12:6745343	12	6745343	LPAR5	Open sea	0.0650502	0.01367593	0.00000809	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01919885	chr4:3365330	4	3365330	RGS12	Island	0.07682065	0.01615423	0.00000812	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25537245	chr17:56413890	17	56413890	-	Open sea	-0.02288719	0.00481394	0.00000816	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18521771	chr9:117373239	9	117373239	C9orf91	North shore	-0.03250112	0.00683699	0.00000818	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02756107	chr7:99517460	7	99517460	TRIM4	South shore	-0.06004042	0.01263111	0.00000819	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06800962	chr3:149096029	3	149096029	TM4SF1	Open sea	-0.08076728	0.01700048	0.00000827	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00213295	chr17:32925561	17	32925561	TMEM132E	Open sea	0.06058631	0.01277262	0.00000851	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14265704	chr2:71131201	2	71131201	VAX2	Island	0.02509609	0.00529704	0.0000087	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25478132	chr10:102854188	10	102854188	TLX1NB	Open sea	0.04600599	0.00971443	0.00000877	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05286653	chr19:46800602	19	46800602	HIF3A	Island	-0.05614017	0.01185567	0.00000878	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20455092	chr5:42508024	5	42508024	GHR	Open sea	0.06257217	0.01321749	0.00000883	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02956248	chr6:32120901	6	32120901	PPT2;PRRT1	North shore	0.08323787	0.01759189	0.00000891	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08702344	chr7:90031349	7	90031349	CLDN12	Open sea	-0.05331849	0.01127277	0.00000897	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24890964	chr20:36153642	20	36153642	BLCAP	North shelf	-0.03250136	0.0068733	0.00000901	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16205352	chr12:49688176	12	49688176	PRPH	North shore	0.04605141	0.00974679	0.00000915	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24718197	chr17:79485709	17	79485709	-	Island	0.04295797	0.00909316	0.00000917	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05408284	chr5:134240138	5	134240138	PCBD2	North shore	-0.03731918	0.00790168	0.00000922	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15444626	chr17:48205558	17	48205558	SAMD14	North shore	-0.02986092	0.00632464	0.00000927	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14058476	chr14:24835609	14	24835609	NFATC4	North shore	0.06796295	0.01439834	0.00000931	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08943494	chr11:36422615	11	36422615	PRR5L	Open sea	-0.04248319	0.00900036	0.00000932	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14851685	chr19:15618559	19	15618559	CYP4F22	North shore	0.03861421	0.00818107	0.00000932	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19921353	chr6:33043574	6	33043574	HLA-DPB1	Open sea	-0.0221648	0.00469627	0.00000933	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07869830	chr10:105253117	10	105253117	NEURL	North shore	0.03834873	0.0081329	0.00000949	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15891218	chr14:61748354	14	61748354	TMEM30B	South shore	0.06046892	0.01282557	0.00000951	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22367556	chr12:99139301	12	99139301	ANKS1B	North shore	0.04743276	0.01006149	0.00000953	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11124652	chr2:62462782	2	62462782	-	Open sea	-0.05452796	0.01157568	0.00000967	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06879822	chr19:42719482	19	42719482	DEDD2	North shore	-0.04034067	0.00857339	0.00000987	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09274826	chr1:156718357	1	156718357	HDGF	North shelf	-0.0167059	0.0035509	0.00000989	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21166916	chr22:42316481	22	42316481	-	South shore	0.02393402	0.00508902	0.00000995	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15853169	chr2:242002555	2	242002555	SNED1	North shelf	0.04576039	0.00973123	0.00000998	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11570656	chr13:45149702	13	45149702	TSC22D1	North shore	-0.04729953	0.01005869	0.00000998	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07037725	chr5:141699580	5	141699580	SPRY4	Open sea	0.05570849	0.01185128	0.00001	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06340364	chr7:6655973	7	6655973	ZNF853	South shore	-0.03211677	0.0068308	0.00001	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21626848	chr17:39969267	17	39969267	SC65;FKBP10	South shore	0.02862887	0.00609239	0.0000101	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27039118	chr8:116575902	8	116575902	TRPS1	Open sea	-0.03722595	0.00792452	0.0000102	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25932290	chr15:89939252	15	89939252	LOC254559	North shelf	0.05265444	0.01122459	0.0000104	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00525011	chr16:122031	16	122031	RHBDF1	Island	-0.0486324	0.01036499	0.0000104	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12093519	chr7:19146441	7	19146441	-	North shore	0.02395421	0.00510305	0.0000105	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00521464	chr17:72872308	17	72872308	-	South shelf	0.04495858	0.00959442	0.0000106	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24911721	chr22:46508454	22	46508454	MIRLET7A3;LOC400931;MIRLET7B	Open sea	0.14223713	0.03036658	0.0000107	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23384027	chr12:54688344	12	54688344	NFE2	Open sea	-0.03758282	0.00802635	0.0000108	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18887033	chr2:7005947	2	7005947	CMPK2	Island	0.02623367	0.00560567	0.0000109	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23025459	chr1:3134420	1	3134420	PRDM16	Open sea	-0.06612361	0.01414414	0.0000111	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19572912	chr2:44264617	2	44264617	-	Open sea	0.0200302	0.00428358	0.0000111	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01819306	chr8:79716458	8	79716458	IL7	North shore	-0.01016484	0.00217441	0.0000111	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02401235	chr10:62538861	10	62538861	CDK1;CDC2	Island	-0.00319198	0.00068323	0.0000112	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17516330	chr15:74494781	15	74494781	STRA6	Open sea	0.04085107	0.00874246	0.0000112	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05262549	chr1:183256588	1	183256588	NMNAT2	Open sea	0.03998073	0.00855954	0.0000113	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01037823	chr16:2879998	16	2879998	ZG16B	Open sea	-0.0406188	0.00869582	0.0000113	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10723746	chr19:2332499	19	2332499	SPPL2B	North shore	-0.04522426	0.00968457	0.0000113	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11387897	chr1:183914188	1	183914188	GLT25D2	Open sea	-0.01293765	0.00277049	0.0000115	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14378925	chr11:64635728	11	64635728	EHD1	Open sea	-0.04543479	0.0097395	0.0000115	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00119811	chr5:73092353	5	73092353	RGNEF	Open sea	-0.03081721	0.00660842	0.0000116	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23013968	chr15:93616959	15	93616959	RGMA	Island	-0.03307926	0.00709399	0.0000116	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20762729	chr21:30451398	21	30451398	C21orf7	Open sea	-0.03276957	0.00702777	0.0000116	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22551065	chr5:126565698	5	126565698	-	South shore	-0.055325	0.01186833	0.0000117	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16426670	chr20:2675996	20	2675996	EBF4	South shore	0.05659494	0.01214037	0.0000117	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23895076	chr17:8578385	17	8578385	-	Open sea	0.05622079	0.01206785	0.0000118	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00637144	chr13:52360268	13	52360268	DHRS12	Open sea	-0.06680145	0.01435697	0.0000121	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04813911	chr15:65503889	15	65503889	CILP	Open sea	-0.02859991	0.00615389	0.0000123	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14071650	chr9:129379319	9	129379319	LMX1B	South shore	0.05510108	0.01185725	0.0000124	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00087425	chr7:22766829	7	22766829	IL6	Open sea	-0.01540292	0.00331698	0.0000125	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05903330	chr22:39542136	22	39542136	CBX7	Island	-0.04519303	0.00973692	0.0000126	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01899130	chr14:55348681	14	55348681	GCH1	Open sea	-0.04103046	0.00881378	0.0000127	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04299080	chr1:38274753	1	38274753	C1orf122;YRDC	South shore	-0.04373697	0.00943091	0.0000128	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21147708	chr6:7611002	6	7611002	SNRNP48	Open sea	-0.08859666	0.01911308	0.0000129	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08327744	chr8:33423298	8	33423298	RNF122	North shore	-0.05521935	0.01190885	0.0000129	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06895664	chr8:119531106	8	119531106	SAMD12	Open sea	0.05344012	0.01152822	0.0000131	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23359665	chr6:32120907	6	32120907	PPT2;PRRT1	North shore	0.10635314	0.0229705	0.0000132	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01798157	chr1:203276595	1	203276595	BTG2	South shore	-0.03292513	0.00711352	0.0000133	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18284427	chr1:9713284	1	9713284	C1orf200;PIK3CD	South shore	-0.03129608	0.00676283	0.0000133	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08438690	chr3:52279403	3	52279403	PPM1M	North shore	-0.05590637	0.01208651	0.0000134	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18715243	chr8:37658755	8	37658755	GPR124	South shelf	0.04745135	0.0102582	0.0000134	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20938359	chr12:322250	12	322250	SLC6A12	Open sea	-0.04468174	0.00967205	0.0000137	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03047995	chr14:24601588	14	24601588	FITM1	Island	-0.03652116	0.00790408	0.0000137	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00093643	chr15:44579510	15	44579510	CASC4	North shore	-0.05208217	0.01127026	0.0000137	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08270434	chr16:21513850	16	21513850	LOC100271836	Island	-0.00517532	0.00112	0.0000137	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23786580	chr7:43204506	7	43204506	HECW1	Open sea	-0.06161683	0.01334074	0.0000138	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05014727	chr10:6214016	10	6214016	PFKFB3	Open sea	-0.09912916	0.02146938	0.0000139	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23482898	chr3:12858887	3	12858887	CAND2	South shelf	-0.03072068	0.0066585	0.000014	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25630910	chr12:123753186	12	123753186	CDK2AP1	North shore	-0.01880509	0.00407583	0.000014	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16269196	chr4:141264721	4	141264721	SCOC	Open sea	-0.07372614	0.01598418	0.0000141	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11540997	chr15:45407818	15	45407818	DUOX2;DUOXA2	North shore	0.02826284	0.00612624	0.0000141	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17864156	chr17:32582828	17	32582828	CCL2	Open sea	-0.0487511	0.01056724	0.0000141	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21067023	chr18:501513	18	501513	COLEC12	South shore	0.06736733	0.01460423	0.0000141	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00377358	chr20:61639277	20	61639277	BHLHE23	North shore	0.03408058	0.00738979	0.0000142	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21268658	chr1:43998294	1	43998294	PTPRF	South shore	0.03884503	0.00842861	0.0000143	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20746552	chr10:63809108	10	63809108	ARID5B	Open sea	-0.04505678	0.00978405	0.0000145	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01568317	chr14:74895911	14	74895911	-	South shelf	0.06343885	0.01377626	0.0000145	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15500841	chr13:88078884	13	88078884	-	Open sea	0.04320867	0.00938903	0.0000147	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19317715	chr17:40996578	17	40996578	AOC2	Open sea	-0.07539209	0.01639379	0.0000149	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16810293	chr3:149095743	3	149095743	TM4SF1	Open sea	-0.04829454	0.01051196	0.0000151	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15671996	chr6:30140325	6	30140325	TRIM15	South shore	0.03575739	0.00778369	0.0000152	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08604416	chr10:97278327	10	97278327	SORBS1	Open sea	0.04686451	0.01020436	0.0000152	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14976447	chr8:24151874	8	24151874	ADAM28	Open sea	-0.02775221	0.00604898	0.0000155	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13303654	chr10:31610754	10	31610754	ZEB1	South shore	-0.04533849	0.00988193	0.0000155	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10891482	chr11:60467228	11	60467228	MS4A8B	Open sea	-0.04110951	0.00896786	0.0000157	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04229928	chr11:119303807	11	119303807	-	Open sea	0.06591511	0.01438064	0.0000158	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07606495	chr19:13993318	19	13993318	C19orf57	South shelf	-0.02715252	0.00592463	0.0000158	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17497608	chr7:90896701	7	90896701	FZD1	South shore	0.17008764	0.03714311	0.000016	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16403326	chr12:50359051	12	50359051	AQP5	North shelf	0.0211105	0.00460939	0.000016	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00695391	chr1:2525548	1	2525548	MMEL1	North shore	-0.05972334	0.01307404	0.0000167	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13953753	chr10:118896012	10	118896012	VAX1	Island	0.0463556	0.01014597	0.0000167	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11360522	chr13:113379828	13	113379828	ATP11A	North shelf	-0.03572408	0.00781935	0.0000167	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04325591	chr16:74806009	16	74806009	FA2H	North shelf	-0.03245164	0.00710409	0.0000167	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26135172	chr3:45595231	3	45595231	-	Open sea	-0.06011419	0.01316069	0.0000168	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16092017	chr5:134827643	5	134827643	-	Island	0.03164367	0.00692897	0.0000168	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10963398	chr17:72932651	17	72932651	OTOP3	South shore	-0.02235108	0.00489497	0.0000169	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11873462	chr8:144611940	8	144611940	ZC3H3	Open sea	-0.03735877	0.00818836	0.0000171	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22236626	chr1:212606819	1	212606819	NENF	Island	-0.02750786	0.00603192	0.0000172	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10385101	chr7:707728	7	707728	PRKAR1B	North shelf	-0.05326627	0.01168013	0.0000172	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04663194	chr11:66315239	11	66315239	ACTN3	South shore	0.04152225	0.00910522	0.0000172	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04413853	chr17:58499706	17	58499706	C17orf64	South shore	0.04876056	0.01068994	0.0000172	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20761187	chr11:133900924	11	133900924	LOC100128239	Open sea	0.08777556	0.01925411	0.0000173	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00067518	chr1:7763225	1	7763225	CAMTA1	North shore	0.06082325	0.01334298	0.0000174	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01418153	chr1:3240129	1	3240129	PRDM16	Island	-0.05771847	0.01266521	0.0000174	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07798347	chr1:21917570	1	21917570	-	Open sea	-0.04567047	0.01002187	0.0000174	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00245890	chr3:58574042	3	58574042	-	South shore	0.05114498	0.01122811	0.0000176	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09686672	chr12:57589253	12	57589253	LRP1	Open sea	0.05932682	0.01302413	0.0000176	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27642528	chr10:88814651	10	88814651	GLUD1	Open sea	-0.04250166	0.00933689	0.0000178	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05961212	chr3:119298195	3	119298195	ADPRH	North shore	-0.04215224	0.0092621	0.0000179	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02747298	chr18:814876	18	814876	-	South shelf	0.03473588	0.00763636	0.000018	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07421287	chr1:111218287	1	111218287	KCNA3	South shore	0.04298857	0.00945354	0.0000181	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09706245	chr3:16537879	3	16537879	RFTN1	Open sea	-0.02899051	0.00637604	0.0000181	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00904823	chr10:112418708	10	112418708	RBM20	Open sea	0.04090903	0.00899674	0.0000181	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19307939	chr2:219719071	2	219719071	-	Open sea	0.02733186	0.00601426	0.0000183	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19048176	chr6:32120324	6	32120324	PPT2;PRRT1	North shore	0.03366237	0.00740662	0.0000183	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16580985	chr4:1550194	4	1550194	-	Open sea	0.11760271	0.02588538	0.0000184	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09809672	chr1:236557682	1	236557682	EDARADD	North shore	-0.03483243	0.00766862	0.0000185	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12926720	chr3:30647773	3	30647773	TGFBR2	North shore	-0.02249603	0.00495314	0.0000185	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02228160	chr5:143192067	5	143192067	HMHB1	Open sea	-0.03819457	0.00841128	0.0000186	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00283524	chr22:44639906	22	44639906	KIAA1644	Open sea	0.0535689	0.01180088	0.0000187	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02148612	chr1:248018816	1	248018816	-	North shore	-0.04780646	0.01055076	0.0000193	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08384239	chr2:160041968	2	160041968	TANC1	Open sea	-0.05969375	0.01317416	0.0000193	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13487983	chr9:137296319	9	137296319	RXRA	North shelf	-0.0216786	0.00478555	0.0000193	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05571472	chr6:31802104	6	31802104	C6orf48;SNORD48	North shore	-0.03092837	0.00683072	0.0000195	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15367892	chr10:119297716	10	119297716	EMX2OS	South shore	0.03535265	0.0078102	0.0000196	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12664119	chr1:119532352	1	119532352	TBX15	South shore	0.02671494	0.00590277	0.0000197	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02466798	chr19:941571	19	941571	ARID3A	Island	-0.03795203	0.00838824	0.0000198	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21550024	chr4:123747533	4	123747533	FGF2	North shore	0.07381842	0.01632112	0.0000199	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03485667	chr16:75143200	16	75143200	ZNRF1	Open sea	-0.04651176	0.01028482	0.0000199	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08312412	chr5:141443781	5	141443781	-	Open sea	0.03035018	0.00671302	0.00002	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04542977	chr1:51982669	1	51982669	EPS15	North shore	-0.06756205	0.01494653	0.0000201	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13019568	chr14:95826830	14	95826830	-	Island	0.0616121	0.01363089	0.0000201	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12860635	chr6:30095140	6	30095140	-	North shore	0.06448312	0.01426932	0.0000202	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10454258	chr16:27443933	16	27443933	IL21R	Open sea	-0.05580511	0.0123557	0.0000204	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10997810	chr17:75471491	17	75471491	SEPT9	Open sea	-0.02878006	0.00637354	0.0000204	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06105699	chr17:79971436	17	79971436	ASPSCR1	Open sea	0.04974459	0.01101941	0.0000205	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22497969	chr1:3143018	1	3143018	PRDM16	Open sea	-0.05929302	0.01313649	0.0000206	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08420135	chr12:52717725	12	52717725	-	South shelf	0.07489617	0.01659337	0.0000206	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17524478	chr22:43623494	22	43623494	SCUBE1	Island	0.05780299	0.01282698	0.0000212	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05526498	chr17:49012893	17	49012893	-	South shelf	-0.0371105	0.0082394	0.0000213	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16234298	chr22:17091297	22	17091297	psiTPTE22	South shore	-0.02789561	0.00619541	0.0000215	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01877936	chr6:4254352	6	4254352	-	North shore	-0.08077155	0.01794727	0.0000216	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23367683	chr5:180627941	5	180627941	TRIM7	North shelf	0.05839105	0.01296964	0.0000218	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09690072	chr17:37324234	17	37324234	-	South shelf	-0.03012776	0.00670112	0.000022	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09214412	chr15:93614970	15	93614970	RGMA	North shore	0.08841543	0.01967127	0.0000221	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11188223	chr1:79658903	1	79658903	-	Open sea	-0.06222151	0.01384829	0.0000222	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01421380	chr11:62446817	11	62446817	UBXN1	South shore	-0.03489048	0.00776502	0.0000222	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05249026	chr16:11031524	16	11031524	DEXI	North shelf	-0.05395689	0.01200735	0.0000222	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14091208	chr3:128722579	3	128722579	CCDC48	Island	-0.03783134	0.00842118	0.0000223	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00115288	chr11:705892	11	705892	EPS8L2	Island	-0.02952124	0.00657264	0.0000224	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11092416	chr6:29617549	6	29617549	-	North shore	-0.01623909	0.0036179	0.0000226	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09307264	chr17:4902281	17	4902281	INCA1;KIF1C	South shore	0.02699922	0.00601551	0.0000227	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11743675	chr12:41221855	12	41221855	CNTN1	Open sea	0.12184206	0.02715692	0.0000228	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08635097	chr13:44833857	13	44833857	-	Open sea	-0.03913099	0.00872255	0.0000228	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11453058	chr19:14064176	19	14064176	PODNL1;DCAF15	South shore	-0.03939559	0.00878166	0.0000228	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12762816	chr2:172953392	2	172953392	DLX1	South shore	0.01913805	0.004267	0.0000229	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17431739	chr10:23384047	10	23384047	MSRB2	North shore	-0.03799214	0.00847075	0.0000229	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01554383	chr8:74788931	8	74788931	UBE2W	North shore	0.04440808	0.00990268	0.000023	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21915678	chr17:59494040	17	59494040	-	Island	0.05464692	0.01218557	0.000023	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10179004	chr3:48601902	3	48601902	COL7A1;UCN2	Open sea	0.05337462	0.01190791	0.0000232	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17816357	chr7:124430776	7	124430776	-	Open sea	-0.05121578	0.01142721	0.0000232	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15329133	chr5:135467951	5	135467951	SMAD5;SMAD5OS	North shore	-0.04448512	0.00993102	0.0000234	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11482879	chr17:4480083	17	4480083	-	Open sea	0.06759476	0.01508777	0.0000234	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26670562	chr4:86954105	4	86954105	MAPK10	Open sea	-0.04286232	0.00957362	0.0000236	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11828203	chr7:31014714	7	31014714	GHRHR	Open sea	0.02938868	0.00656994	0.000024	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14391148	chr9:140175219	9	140175219	C9orf167	Island	0.02635756	0.00589439	0.0000241	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27503360	chr17:43890749	17	43890749	CRHR1	Open sea	0.03240399	0.00724688	0.0000241	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15297650	chr2:135477056	2	135477056	TMEM163	South shore	-0.03813025	0.008528	0.0000242	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23840027	chr1:29225533	1	29225533	EPB41	Open sea	-0.05042209	0.01127339	0.0000243	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06785293	chr6:157187520	6	157187520	ARID1B	Open sea	-0.03012339	0.00674014	0.0000243	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07696006	chr15:74528563	15	74528563	CCDC33	Open sea	-0.05475879	0.01225126	0.0000243	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14011845	chr17:59533635	17	59533635	TBX4	Island	0.03726696	0.00833737	0.0000243	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21919968	chr1:147823425	1	147823425	-	North shelf	0.02955114	0.00661496	0.0000245	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02097479	chr17:34891843	17	34891843	PIGW;MYO19	South shore	-0.07867433	0.01760921	0.0000245	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00124004	chr8:87527257	8	87527257	CPNE3	Island	-0.03561233	0.00797569	0.0000247	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19433091	chr15:43426498	15	43426498	TMEM62	South shore	-0.04628173	0.01036346	0.0000247	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14794735	chr7:129415968	7	129415968	MIR183;MIR96	North shelf	0.05733476	0.01284222	0.0000248	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10190813	chr7:48018530	7	48018530	HUS1	North shore	-0.0475943	0.01066318	0.0000249	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04902458	chr4:1794366	4	1794366	FGFR3	North shore	0.03853827	0.0086362	0.000025	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08112737	chr4:57178051	4	57178051	KIAA1211	North shelf	0.02966742	0.00665143	0.0000252	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01597480	chr7:120629404	7	120629404	C7orf58	Open sea	-0.08958398	0.0200847	0.0000252	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18248586	chr11:113329026	11	113329026	DRD2	Open sea	-0.05973966	0.01339576	0.0000252	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17662083	chr19:36004632	19	36004632	DMKN	Open sea	0.05197317	0.01165348	0.0000252	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17973115	chr1:25333445	1	25333445	-	Open sea	-0.0596895	0.01338709	0.0000253	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13359765	chr1:234350988	1	234350988	SLC35F3	South shore	0.04322491	0.00969659	0.0000254	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25374813	chr5:138719374	5	138719374	SLC23A1	Open sea	-0.03614464	0.00810854	0.0000254	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06033949	chr6:155259167	6	155259167	-	Open sea	0.05258949	0.01179588	0.0000254	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24496614	chr11:61735970	11	61735970	FTH1	South shore	-0.02242225	0.0050303	0.0000255	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11216632	chr1:155944655	1	155944655	ARHGEF2	North shelf	-0.03269086	0.00733889	0.0000257	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13105904	chr14:24900044	14	24900044	CBLN3;KHNYN	South shore	-0.07698087	0.01728431	0.0000258	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01901788	chr20:33145848	20	33145848	MAP1LC3A	North shore	-0.07099297	0.01594264	0.0000259	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14482313	chr12:52626889	12	52626889	KRT7	Island	0.01403554	0.00315356	0.0000261	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22980697	chr10:16874865	10	16874865	CUBN	Open sea	-0.04282331	0.00962661	0.0000263	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16437021	chr16:89510331	16	89510331	ANKRD11	Open sea	-0.04595559	0.0103314	0.0000264	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03613618	chr8:97658325	8	97658325	PGCP	South shore	-0.03043319	0.00684784	0.0000268	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03808007	chr17:33167772	17	33167772	-	Open sea	-0.06693771	0.0150645	0.0000268	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04402828	chr1:15208649	1	15208649	KIAA1026	Open sea	0.03330012	0.00749602	0.0000269	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13896748	chr10:30872987	10	30872987	-	Open sea	-0.05186053	0.01167597	0.000027	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21292067	chr17:3880172	17	3880172	-	Open sea	-0.03741447	0.00842657	0.0000272	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05181795	chr6:41603443	6	41603443	-	North shore	-0.05690077	0.01282574	0.0000275	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13038847	chr22:28073997	22	28073997	-	Island	0.12075098	0.0272125	0.0000275	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13536265	chr14:24836539	14	24836539	NFATC4	North shore	0.02856346	0.00643906	0.0000276	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05709923	chr22:44351079	22	44351079	SAMM50	Island	-0.00598438	0.0013497	0.0000278	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20334115	chr1:226107899	1	226107899	PYCR2	North shelf	-0.04605261	0.01038736	0.0000279	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27104271	chr11:74862127	11	74862127	SLCO2B1	Open sea	0.01752002	0.00394953	0.0000279	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08520423	chr16:68013968	16	68013968	DPEP3	Island	-0.00433552	0.00097341	0.0000282	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02525826	chr4:55091178	4	55091178	-	North shore	0.032405	0.00732074	0.0000286	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17292662	chr8:54758936	8	54758936	-	South shelf	-0.05396205	0.01219254	0.0000287	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19994384	chr10:44436485	10	44436485	-	Open sea	-0.05607722	0.01267068	0.0000287	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01373189	chr13:33002820	13	33002820	N4BP2L1	South shore	-0.03641267	0.00822764	0.0000287	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19478223	chr4:141264602	4	141264602	SCOC	Open sea	-0.03161672	0.00714685	0.0000289	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11199014	chr19:39798563	19	39798563	LRFN1	Island	0.06748697	0.01525676	0.0000289	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12914251	chr18:158292	18	158292	USP14	Island	-0.00575519	0.00130033	0.000029	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17935703	chr9:139642998	9	139642998	LCN6	South shelf	-0.04798758	0.01083684	0.0000291	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12663553	chr3:111852312	3	111852312	GCET2	Open sea	-0.02199445	0.00497641	0.0000293	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09361691	chr13:47471169	13	47471169	HTR2A	Open sea	-0.01720057	0.00388994	0.0000294	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01320698	chr1:9788517	1	9788517	PIK3CD	North shore	-0.04707606	0.01065398	0.0000295	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25764570	chr6:32407289	6	32407289	HLA-DRA	Open sea	-0.05987139	0.01356473	0.00003	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11294761	chr17:80275530	17	80275530	CD7	North shore	0.02786362	0.00631319	0.00003	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21771528	chr5:18745861	5	18745861	-	Open sea	-0.06133402	0.01389946	0.0000301	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06519422	chr6:29599226	6	29599226	GABBR1	North shore	0.0626015	0.01418514	0.0000301	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06094126	chr1:17025723	1	17025723	ESPNP	North shore	0.02253464	0.00510744	0.0000302	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04751276	chr15:76634843	15	76634843	-	Island	0.03302211	0.00748646	0.0000303	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04945216	chr7:3186788	7	3186788	-	Open sea	-0.07929738	0.01798419	0.0000305	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23401251	chr2:27683905	2	27683905	IFT172	Open sea	-0.04954735	0.0112387	0.0000306	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02271895	chr5:127872958	5	127872958	FBN2	Island	0.01847086	0.00419015	0.0000306	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23435594	chr3:193983179	3	193983179	-	Open sea	-0.03884266	0.00881844	0.000031	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06752482	chr17:58499816	17	58499816	C17orf64	South shore	0.02379954	0.00540331	0.000031	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21825040	chr13:40749072	13	40749072	-	South shelf	-0.03509984	0.00797169	0.0000312	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15152945	chr1:161283898	1	161283898	SDHC;LOC642502	Island	-0.02129668	0.00483933	0.0000315	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21028946	chr20:34680004	20	34680004	-	Island	0.02595866	0.00590004	0.0000316	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02539402	chr22:43061182	22	43061182	-	South shelf	-0.04451826	0.01011736	0.0000316	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14613878	chr20:35504198	20	35504198	C20orf118	Open sea	0.04404174	0.0100145	0.0000318	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19515081	chr14:105268492	14	105268492	ZBTB42	Island	0.04727087	0.01074976	0.0000319	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14043816	chr1:229166684	1	229166684	-	Open sea	-0.05832538	0.0132655	0.000032	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10099827	chr16:85551514	16	85551514	-	Island	0.0699216	0.01590411	0.000032	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12748639	chr2:71035898	2	71035898	CLEC4F	Open sea	0.0526587	0.01197981	0.0000321	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13804575	chr9:109626999	9	109626999	ZNF462	South shelf	-0.07412611	0.01686747	0.0000322	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18520238	chr11:36422557	11	36422557	PRR5L	Open sea	-0.04879895	0.01110639	0.0000323	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14858616	chr10:72219819	10	72219819	-	South shore	0.04469228	0.01017578	0.0000325	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07056567	chr7:100273943	7	100273943	GNB2	Island	-0.02513423	0.00572565	0.0000328	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12929160	chr13:77030645	13	77030645	-	Open sea	-0.07244404	0.01650302	0.0000328	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20193802	chr22:19709696	22	19709696	SEPT5;GP1BB	Island	0.06743692	0.01536388	0.0000329	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10535320	chr17:61908869	17	61908869	PSMC5	South shelf	-0.02313443	0.00527274	0.0000331	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13189271	chr6:15365693	6	15365693	JARID2	Open sea	-0.03161359	0.00720614	0.0000332	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22894896	chr17:29886890	17	29886890	MIR193A	Island	0.04486296	0.01021943	0.0000332	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00174279	chr17:75525361	17	75525361	-	South shore	0.03264984	0.0074451	0.0000334	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13589431	chr18:77609786	18	77609786	-	South shore	-0.03705667	0.00845052	0.0000334	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12696328	chr1:227729680	1	227729680	-	Island	0.04452956	0.01016568	0.000034	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07456180	chr22:18277535	22	18277535	MICAL3	South shore	0.03635752	0.00830016	0.000034	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02490847	chr16:75282051	16	75282051	BCAR1	North shelf	0.02503021	0.00571497	0.0000341	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00451635	chr16:10675030	16	10675030	EMP2	South shore	0.04663851	0.01065327	0.0000343	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18264728	chr5:39421189	5	39421189	DAB2	North shelf	-0.04040142	0.00923165	0.0000345	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02743576	chr2:241992712	2	241992712	SNED1	Island	0.04185982	0.00956689	0.0000346	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24363020	chr3:72706849	3	72706849	-	South shelf	-0.08593242	0.01963894	0.0000346	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22274117	chr6:16713613	6	16713613	ATXN1	Open sea	-0.05030375	0.01150614	0.0000351	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14260083	chr7:4876858	7	4876858	RADIL	South shore	0.05872077	0.0134341	0.0000352	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18196535	chr7:132937634	7	132937634	EXOC4	Open sea	-0.00311651	0.00071247	0.0000352	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02240291	chr7:150943825	7	150943825	SMARCD3	North shore	0.04743036	0.0108538	0.0000353	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27585939	chr11:108983607	11	108983607	-	Open sea	-0.06962394	0.01593176	0.0000353	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01307108	chr6:43208931	6	43208931	-	North shelf	0.04035749	0.00923838	0.0000355	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25901204	chr15:76628858	15	76628858	ISL2	North shore	0.01906549	0.0043638	0.0000355	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18680834	chr19:30863349	19	30863349	ZNF536	North shelf	0.03714211	0.00850139	0.0000355	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00414077	chr20:35504511	20	35504511	C20orf118	Open sea	0.03228707	0.00739081	0.0000355	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01189606	chr3:48471901	3	48471901	PLXNB1	South shore	-0.05937061	0.01359164	0.0000356	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03609639	chr10:101291397	10	101291397	NKX2-3	North shore	-0.06617498	0.01515399	0.0000357	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15478483	chr6:111936529	6	111936529	-	Open sea	0.06925763	0.01586229	0.0000358	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00522276	chr8:67452722	8	67452722	-	North shore	-0.0335157	0.00767902	0.000036	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10962754	chr1:1117625	1	1117625	TTLL10	South shore	0.05765803	0.01321375	0.0000362	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08881614	chr3:51433428	3	51433428	VPRBP;RBM15B	South shelf	-0.02882934	0.00660684	0.0000362	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18822950	chr17:46810934	17	46810934	-	Island	0.01750717	0.00401247	0.0000362	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13283635	chr20:61450653	20	61450653	COL9A3	South shore	-0.03371754	0.00772738	0.0000362	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16411857	chr16:57023191	16	57023191	NLRC5	Island	-0.04542167	0.01041092	0.0000363	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00980581	chr6:36238095	6	36238095	PNPLA1	Open sea	0.04437914	0.01017589	0.0000365	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04459939	chr15:90291141	15	90291141	-	North shelf	0.07106357	0.01629879	0.0000367	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06013895	chr17:12332606	17	12332606	-	Open sea	-0.02722057	0.00624661	0.000037	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19462635	chr11:121237843	11	121237843	-	South shelf	-0.05533129	0.01269936	0.0000371	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09411730	chr11:65190946	11	65190946	NEAT1	Island	-0.05409991	0.01241939	0.0000372	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13089335	chr1:167203243	1	167203243	POU2F1	Open sea	-0.04419818	0.01015009	0.0000374	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04174124	chr8:143591042	8	143591042	BAI1	North shore	0.04159686	0.00955783	0.0000378	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09390001	chr15:79725642	15	79725642	KIAA1024	Island	0.03800102	0.00873251	0.0000378	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14518658	chr22:37726676	22	37726676	-	North shelf	0.04578967	0.01052173	0.0000378	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25021247	chr3:49460162	3	49460162	AMT;NICN1	Open sea	-0.02827051	0.00649769	0.0000379	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24489344	chr22:46457998	22	46457998	-	Island	0.05345762	0.01228508	0.0000379	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02567488	chr6:32822565	6	32822565	PSMB9;TAP1	South shore	-0.0337802	0.00776448	0.000038	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02614428	chr10:78841417	10	78841417	KCNMA1	Open sea	0.04563374	0.01049003	0.000038	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04289069	chr10:14968808	10	14968808	DCLRE1C	Open sea	-0.02755372	0.00633375	0.000038	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04156889	chr3:186819780	3	186819780	-	Open sea	-0.02105011	0.00483906	0.0000381	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17103217	chr6:33245721	6	33245721	B3GALT4	South shore	-0.03277795	0.0075373	0.0000382	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23378033	chr12:65672031	12	65672031	MSRB3	North shore	-0.05550642	0.01276392	0.0000382	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26534057	chr16:19301966	16	19301966	LOC728276	Open sea	-0.02861715	0.00658063	0.0000382	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09517873	chr1:12656315	1	12656315	DHRS3	South shore	0.0521783	0.0119994	0.0000383	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07095908	chr2:430882	2	430882	-	South shelf	-0.02576659	0.0059252	0.0000383	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14096899	chr2:240697719	2	240697719	-	Open sea	0.05549678	0.01276436	0.0000384	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11793449	chr17:76313872	17	76313872	-	South shelf	-0.02012074	0.00462772	0.0000384	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02879960	chr22:50483545	22	50483545	TTLL8	Island	-0.04815257	0.01108034	0.0000387	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22437987	chr17:3820910	17	3820910	P2RX1	Open sea	-0.02271867	0.00522915	0.0000388	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07548257	chr22:31686466	22	31686466	PIK3IP1	North shore	-0.05642541	0.01298774	0.0000388	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04740205	chr11:82871065	11	82871065	PCF11	South shelf	-0.04857665	0.01118625	0.0000391	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13433366	chr17:8057058	17	8057058	PER1	South shore	-0.02320565	0.00534327	0.0000391	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18187035	chr20:62434097	20	62434097	ZBTB46	Island	-0.06596057	0.0151881	0.0000391	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06260709	chr20:48626621	20	48626621	-	Island	0.06812931	0.01570366	0.0000397	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20724257	chr6:32407784	6	32407784	HLA-DRA	Open sea	-0.03826404	0.00882116	0.0000398	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01260308	chr14:50233662	14	50233662	KLHDC2	North shore	0.01508176	0.00347848	0.0000401	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03048432	chr14:51290751	14	51290751	NIN	Open sea	-0.06871125	0.01585822	0.0000406	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19233268	chr12:52715661	12	52715661	KRT83	South shore	0.02907725	0.00671316	0.0000408	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19940644	chr1:12112386	1	12112386	-	Open sea	0.05603709	0.01294197	0.000041	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26460530	chr22:39919067	22	39919067	-	South shore	-0.03215404	0.00742647	0.000041	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10738368	chr2:74729551	2	74729551	LBX2;LOC151534	Island	0.02375215	0.00548612	0.0000411	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18639049	chr17:78965417	17	78965417	CHMP6	Island	-0.00318786	0.00073647	0.0000412	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15090036	chr17:48706075	17	48706075	-	Open sea	0.04627332	0.01069312	0.0000414	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12048331	chr3:52302150	3	52302150	WDR82	Open sea	-0.05081523	0.0117456	0.0000416	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08812802	chr12:49686619	12	49686619	-	North shelf	0.04889437	0.01130271	0.0000416	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00476955	chr11:3648013	11	3648013	TRPC2	Open sea	-0.13740831	0.03177045	0.0000418	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01004017	chr2:121657347	2	121657347	GLI2	Open sea	0.0464145	0.01073602	0.000042	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12800962	chr20:48626437	20	48626437	-	Island	0.03723821	0.00861573	0.0000422	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09183151	chr5:170889300	5	170889300	-	Open sea	0.03623773	0.00838537	0.0000423	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07387286	chr8:39172120	8	39172120	ADAM5P	Open sea	0.07437092	0.01721288	0.0000424	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00509772	chr20:32273129	20	32273129	E2F1	North shore	0.02345551	0.00543093	0.0000427	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07656173	chr4:16086023	4	16086023	PROM1	South shore	-0.05177932	0.01199304	0.0000429	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21934230	chr1:228202608	1	228202608	WNT3A	Open sea	-0.04425146	0.01025281	0.0000432	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13285174	chr20:3052221	20	3052221	OXT	Island	-0.08900119	0.02062113	0.0000432	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00108098	chr3:122637664	3	122637664	SEMA5B	North shelf	0.04267452	0.00989057	0.0000434	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03324578	chr3:46887918	3	46887918	-	Island	-0.01716575	0.00396783	0.0000434	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03904291	chr11:119019361	11	119019361	ABCG4	North shore	0.04626007	0.01072369	0.0000435	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12893736	chr17:72429636	17	72429636	GPRC5C	South shore	0.0304503	0.00705852	0.0000435	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12593793	chr1:156074135	1	156074135	-	Open sea	0.03452004	0.00800448	0.0000437	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04427651	chr1:27152694	1	27152694	ZDHHC18	North shore	-0.03494459	0.00810594	0.000044	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22159815	chr1:207975264	1	207975264	MIR29C	Open sea	-0.0553443	0.01283999	0.0000441	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04263163	chr5:177371702	5	177371702	-	South shore	-0.0152466	0.00353504	0.0000441	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10754935	chr10:104182753	10	104182753	FBXL15	South shore	-0.02584624	0.00599736	0.0000442	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08066376	chr11:59577361	11	59577361	MRPL16	North shore	-0.08829635	0.02049441	0.0000444	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06832008	chr6:105401339	6	105401339	-	South shore	0.01876529	0.00435585	0.0000445	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15697019	chr7:77357984	7	77357984	RSBN1L	Open sea	-0.03487686	0.0080956	0.0000445	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23145336	chr6:32060816	6	32060816	TNXB	North shelf	0.0557208	0.01293734	0.0000446	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21834204	chr12:107381471	12	107381471	MTERFD3	South shore	-0.04303554	0.00999157	0.0000446	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23996349	chr8:22831506	8	22831506	-	Open sea	-0.0363836	0.00844947	0.0000448	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13752749	chr9:126130901	9	126130901	CRB2	South shore	0.02336344	0.00542743	0.000045	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27299047	chr7:2103248	7	2103248	MAD1L1	North shelf	-0.03236434	0.0075199	0.0000452	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17385483	chr12:49734595	12	49734595	-	North shore	0.04724046	0.01098013	0.0000454	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26009192	chr2:120282200	2	120282200	SCTR	Island	-0.04655115	0.01082239	0.0000456	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00455386	chr7:140104086	7	140104086	RAB19	Open sea	-0.03747716	0.00871425	0.0000457	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03503087	chr10:118032626	10	118032626	GFRA1	Island	-0.00914831	0.00212725	0.0000457	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04665604	chr6:31696852	6	31696852	DDAH2	Island	-0.03427108	0.00797124	0.0000459	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02935904	chr1:55267293	1	55267293	TTC22	South shore	-0.02528718	0.00588485	0.0000463	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25363607	chr7:90226284	7	90226284	-	Island	-0.00725152	0.0016864	0.0000463	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07038187	chr15:89922989	15	89922989	LOC254559	South shore	0.05668223	0.01319524	0.0000465	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08818632	chr17:72931569	17	72931569	OTOP3	North shore	0.04204197	0.00978691	0.0000465	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26203136	chr7:739057	7	739057	PRKAR1B	Open sea	0.05481727	0.01276168	0.0000466	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05461841	chr16:2879944	16	2879944	ZG16B	Open sea	-0.03528075	0.00821559	0.0000468	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10498429	chr11:64051762	11	64051762	GPR137;BAD	North shore	-0.02354123	0.00548451	0.0000471	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18512336	chr8:70981068	8	70981068	PRDM14	North shore	0.04116842	0.00959401	0.0000473	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09612473	chr2:131210633	2	131210633	-	Open sea	0.02661787	0.00620386	0.0000474	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01262865	chr16:75282094	16	75282094	BCAR1	North shelf	0.02079825	0.00484773	0.0000475	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24678767	chr15:74902976	15	74902976	CLK3	North shelf	0.02368673	0.00552157	0.0000476	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21161526	chr9:123691672	9	123691672	-	Island	-0.03307583	0.0077127	0.0000478	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17000343	chr8:7834142	8	7834142	FAM66E	Open sea	0.01488482	0.00347114	0.0000479	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25167447	chr1:201617042	1	201617042	NAV1	Island	0.08170229	0.01906361	0.0000483	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26163319	chr4:87464191	4	87464191	-	Open sea	0.02201066	0.00513566	0.0000483	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10785977	chr1:27709634	1	27709634	CD164L2	Island	0.02184995	0.0051	0.0000485	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02086195	chr1:12656232	1	12656232	DHRS3	Island	0.06740233	0.01573956	0.0000489	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04673465	chr4:85570164	4	85570164	CDS1	Open sea	-0.05737297	0.01339849	0.0000489	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02028663	chr11:128557589	11	128557589	-	North shelf	-0.03772367	0.00880905	0.0000489	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10968631	chr14:69986021	14	69986021	FLJ44817	Open sea	0.03653085	0.00853014	0.0000489	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23937295	chr1:7762151	1	7762151	CAMTA1	North shelf	0.09713878	0.02268975	0.0000491	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14919164	chr7:45729156	7	45729156	ADCY1	Open sea	-0.03323151	0.0077586	0.0000492	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10238080	chr12:50445058	12	50445058	-	Open sea	0.03144098	0.00734452	0.0000492	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05376219	chr19:2346279	19	2346279	SPPL2B	North shore	-0.04399974	0.01028719	0.0000498	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00099835	chr2:97427033	2	97427033	CNNM4	Island	-0.02376404	0.00555668	0.0000499	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00782811	chr6:46293734	6	46293734	RCAN2	Open sea	0.04329091	0.01012203	0.0000499	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15978899	chr6:30882994	6	30882994	VARS2	South shore	-0.05628508	0.01316514	0.0000502	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14959707	chr16:11876391	16	11876391	ZC3H7A	Open sea	-0.04150801	0.00971015	0.0000503	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17546623	chr10:94165278	10	94165278	-	Open sea	0.03685909	0.00862397	0.0000504	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26335578	chr11:68722738	11	68722738	-	Open sea	-0.03075109	0.00719455	0.0000504	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20514083	chr3:150800762	3	150800762	-	North shelf	0.07726136	0.01807897	0.0000505	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04973183	chr4:160118923	4	160118923	-	Open sea	-0.04106969	0.0096121	0.0000507	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21321372	chr4:141264456	4	141264456	SCOC	Open sea	-0.08544573	0.01999956	0.0000507	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14785527	chr10:90656978	10	90656978	STAMBPL1	Open sea	-0.04493954	0.01051882	0.0000507	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14334161	chr10:72201622	10	72201622	NODAL	South shore	0.03754771	0.00879041	0.0000509	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09477019	chr16:56681945	16	56681945	-	Open sea	0.05142673	0.01204199	0.0000511	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18471725	chr14:78635905	14	78635905	-	Open sea	-0.02499405	0.00585398	0.0000512	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04457658	chr6:37732313	6	37732313	-	Open sea	0.0562794	0.01318353	0.0000514	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03050022	chr15:55559759	15	55559759	RAB27A	Open sea	-0.05349085	0.01253411	0.0000516	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02835964	chr9:127265171	9	127265171	NR5A1	Island	0.03633982	0.00851572	0.0000517	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00022606	chr20:442445	20	442445	TBC1D20	North shore	-0.00632886	0.00148336	0.0000518	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19360907	chr22:37977445	22	37977445	LGALS2	Open sea	-0.06073081	0.01423375	0.0000518	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04478684	chr11:65414099	11	65414099	SIPA1	Island	-0.06554163	0.01536869	0.0000522	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26799474	chr2:202098951	2	202098951	CASP8	Open sea	-0.06746614	0.01582369	0.0000524	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02616769	chr3:22348099	3	22348099	-	Open sea	0.06202733	0.01455364	0.0000527	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08334034	chr15:93615039	15	93615039	RGMA	North shore	0.10833502	0.02541927	0.0000527	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10678215	chr5:143191565	5	143191565	HMHB1	Open sea	-0.05340147	0.0125315	0.0000528	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15033653	chr12:113587581	12	113587581	CCDC42B	North shelf	0.03698296	0.00867867	0.0000528	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17516825	chr1:111213827	1	111213827	-	North shelf	-0.05375615	0.01261575	0.0000529	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23507802	chr3:13914731	3	13914731	WNT7A	Open sea	0.06399894	0.01502124	0.000053	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15705175	chr10:135073499	10	135073499	-	North shore	-0.02421857	0.00568551	0.0000531	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27280037	chr3:124782069	3	124782069	-	Open sea	0.032659	0.00766772	0.0000532	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17606183	chr6:32409413	6	32409413	HLA-DRA	Open sea	-0.05804678	0.01361984	0.0000532	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03184011	chr20:39945503	20	39945503	-	North shore	-0.0228296	0.00536058	0.0000533	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15079315	chr20:4981089	20	4981089	SLC23A2	Open sea	-0.05015039	0.01178058	0.0000537	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06484274	chr3:142164840	3	142164840	XRN1	North shore	-0.03649284	0.00857574	0.000054	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19555708	chr6:32159604	6	32159604	GPSM3	North shelf	-0.01703867	0.00400424	0.000054	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15633035	chr1:154439516	1	154439516	IL6R	Open sea	-0.05518928	0.01297163	0.0000541	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27024992	chr2:48094603	2	48094603	FBXO11	Open sea	-0.01603088	0.003768	0.0000542	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13809236	chr11:45908036	11	45908036	MAPK8IP1	South shore	0.03604934	0.0084732	0.0000542	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01156948	chr17:43662979	17	43662979	-	Island	-0.00213757	0.0005025	0.0000543	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19427338	chr2:42566455	2	42566455	-	Open sea	-0.03441072	0.00808545	0.0000544	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02273827	chr5:35938675	5	35938675	CAPSL	Open sea	-0.04615925	0.01085207	0.0000544	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18157896	chr20:2795593	20	2795593	C20orf141;LOC100288797	Open sea	-0.05288777	0.01243386	0.0000544	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06688763	chr7:92238207	7	92238207	CDK6	Open sea	-0.07873321	0.01851603	0.0000546	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18586277	chr5:76116535	5	76116535	F2RL1	South shore	-0.06245442	0.01469123	0.0000548	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10954174	chr14:90006108	14	90006108	FOXN3	Open sea	-0.0273602	0.00643184	0.0000554	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12526614	chr5:113671086	5	113671086	-	Open sea	-0.02766091	0.00651693	0.0000562	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15428620	chr10:102792835	10	102792835	SFXN3	South shore	-0.02990058	0.00704636	0.0000564	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14646111	chr20:18489660	20	18489660	SEC23B	South shore	0.01293648	0.00304899	0.0000565	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19910679	chr5:149240728	5	149240728	PDE6A	Open sea	-0.08574643	0.02021386	0.0000567	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13758780	chr9:124329514	9	124329514	DAB2IP	Open sea	0.03169092	0.00747107	0.0000567	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22061628	chr2:172966180	2	172966180	DLX2	Island	0.01431486	0.00337478	0.0000568	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03434029	chr1:45274048	1	45274048	TCTEX1D4;BTBD19	South shore	-0.0317657	0.0074921	0.0000572	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25618424	chr1:2989307	1	2989307	PRDM16	North shore	-0.04017271	0.00947556	0.0000572	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06899237	chr6:153353519	6	153353519	RGS17	Open sea	-0.0554005	0.01306936	0.0000573	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22670033	chr5:180646608	5	180646608	-	North shore	0.08056556	0.01900644	0.0000574	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20696737	chr1:201529201	1	201529201	-	Open sea	-0.04014893	0.00947358	0.0000576	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08719380	chr2:152830505	2	152830505	CACNB4	Open sea	0.04407115	0.01039965	0.0000576	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24524285	chr11:64405919	11	64405919	NRXN2	Island	0.05229055	0.01234781	0.0000582	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15659420	chr11:20034979	11	20034979	NAV2	Open sea	-0.047632	0.01125659	0.0000589	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21608225	chr1:144930572	1	144930572	PDE4DIP	North shore	-0.11293974	0.02669571	0.0000591	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05500734	chr7:73437649	7	73437649	-	Open sea	0.03954996	0.00935265	0.0000595	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18685879	chr3:141012746	3	141012746	ACPL2	Open sea	-0.05121716	0.01211822	0.00006	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03779937	chr2:173319893	2	173319893	ITGA6	Open sea	-0.05783111	0.01368566	0.0000602	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22730004	chr1:158656718	1	158656718	SPTA1	Open sea	-0.04561664	0.01079613	0.0000603	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00674004	chr10:101280750	10	101280750	-	North shore	-0.06643992	0.01572776	0.0000605	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24753998	chr21:30452964	21	30452964	C21orf7	Open sea	-0.09100647	0.02155038	0.0000608	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00430895	chr18:13136340	18	13136340	-	North shore	-0.02977724	0.00705212	0.0000609	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09703123	chr6:30658281	6	30658281	NRM	South shelf	0.02434129	0.00576604	0.0000611	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13392029	chr1:44400749	1	44400749	ARTN	North shore	0.03126699	0.00740281	0.0000612	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08221741	chr7:70931770	7	70931770	WBSCR17	Open sea	0.02317459	0.00549134	0.0000614	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02598564	chr10:72822634	10	72822634	-	Open sea	0.04013468	0.00951333	0.0000617	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26262157	chr10:6214079	10	6214079	PFKFB3	Open sea	-0.07141626	0.01692749	0.0000617	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12350592	chr17:42031239	17	42031239	PYY	South shore	0.04073605	0.00965543	0.0000617	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03439703	chr11:14664991	11	14664991	PDE3B;PSMA1	North shore	0.02483398	0.00589019	0.0000623	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06754224	chr1:28585612	1	28585612	SESN2	North shore	-0.0332423	0.00788466	0.0000624	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04303382	chr17:77766421	17	77766421	-	Island	0.02586718	0.0061356	0.0000624	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12899423	chr11:44328154	11	44328154	ALX4	South shore	0.03272185	0.00776495	0.0000628	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10147507	chr3:57113767	3	57113767	ARHGEF3	Island	0.03133488	0.00743753	0.000063	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00718036	chr4:108745325	4	108745325	SGMS2	North shore	0.03375409	0.00801144	0.000063	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13916835	chr17:2078431	17	2078431	SMG6	Open sea	0.03198745	0.00759311	0.0000631	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13561409	chr19:3677220	19	3677220	PIP5K1C	South shore	-0.05538057	0.01314636	0.0000631	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01766396	chr2:198436483	2	198436483	RFTN2	Open sea	0.04087394	0.00970323	0.0000632	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18568843	chr6:52535550	6	52535550	TMEM14A	North shore	-0.02764373	0.00656361	0.0000634	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19871564	chr12:24716714	12	24716714	SOX5	South shore	-0.00477226	0.0011341	0.0000642	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21904329	chr15:66549307	15	66549307	-	South shelf	0.05523733	0.01312642	0.0000642	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13411554	chr3:53700276	3	53700276	CACNA1D	Open sea	-0.09322914	0.02216573	0.0000647	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15260428	chr12:132381902	12	132381902	ULK1	South shore	-0.08096913	0.01925826	0.0000651	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04566561	chr3:123304408	3	123304408	PTPLB	South shore	-0.00207555	0.00049348	0.0000653	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12105190	chr6:30653407	6	30653407	KIAA1949	North shore	-0.02642528	0.00628692	0.0000654	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14441271	chr6:153071856	6	153071856	VIP	Open sea	0.03424897	0.0081491	0.0000655	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16662408	chr6:32053637	6	32053637	TNXB	North shore	0.0333193	0.00792932	0.0000656	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01164574	chr21:22368940	21	22368940	-	North shore	0.07652511	0.01821095	0.0000656	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15030415	chr17:2908068	17	2908068	RAP1GAP2	Open sea	-0.03653746	0.00869584	0.0000657	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21176026	chr4:156592010	4	156592010	GUCY1A3	South shelf	-0.05207749	0.01239792	0.000066	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13633560	chr11:76380921	11	76380921	LRRC32	North shore	0.05368805	0.01278199	0.0000661	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07691146	chr13:51797646	13	51797646	FAM124A	South shore	0.08348172	0.01987548	0.0000661	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05514299	chr17:74868670	17	74868670	MGAT5B	South shelf	-0.04284476	0.01020227	0.0000662	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17418055	chr20:30061002	20	30061002	DEFB124	North shore	0.04569405	0.01088278	0.0000664	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01644611	chr20:3052253	20	3052253	OXT	Island	-0.04991355	0.01188927	0.0000666	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12294118	chr2:202879585	2	202879585	-	Open sea	0.04205276	0.01002402	0.0000673	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02726377	chr4:108745279	4	108745279	SGMS2	North shore	0.06893864	0.0164324	0.0000673	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09478591	chr6:42989096	6	42989096	C6orf153	North shore	-0.0210652	0.0050222	0.0000675	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04722177	chr19:39737768	19	39737768	-	Island	0.03491518	0.00832496	0.0000676	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14605021	chr8:16859754	8	16859754	FGF20	South shore	0.02880032	0.00687065	0.0000681	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25153824	chr1:159870077	1	159870077	CCDC19	Island	0.03034816	0.00724164	0.0000684	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22121941	chr22:46508604	22	46508604	MIRLET7A3;LOC400931;MIRLET7B	Open sea	0.03904994	0.00932248	0.0000689	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07437546	chr6:91096062	6	91096062	-	Open sea	-0.0391794	0.00935711	0.0000693	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09587957	chr15:40399101	15	40399101	BMF	North shore	0.02414522	0.00576727	0.0000694	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16053745	chr3:196240766	3	196240766	C3orf43	Open sea	0.03777991	0.00902526	0.0000696	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04264925	chr5:134875554	5	134875554	-	North shelf	0.04964689	0.01186338	0.0000699	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12062220	chr15:53087232	15	53087232	-	Island	0.01771587	0.00423366	0.00007	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21183502	chr20:58514581	20	58514581	C20orf177;PPP1R3D	Island	-0.0308794	0.00738523	0.0000708	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01636650	chr3:38040315	3	38040315	VILL	Island	-0.04812346	0.0115127	0.0000711	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23754924	chr15:93616943	15	93616943	RGMA	Island	-0.02770815	0.00662935	0.0000712	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13138089	chr2:233251770	2	233251770	ECEL1P2	Island	0.01699702	0.00393096	0.0000713	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15413523	chr5:133451625	5	133451625	TCF7	South shore	0.03324505	0.00795668	0.0000716	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13167816	chr14:24601808	14	24601808	FITM1	South shore	-0.0327541	0.00783986	0.0000717	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12036303	chr6:30652907	6	30652907	KIAA1949	North shore	-0.03226445	0.00772371	0.0000718	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18445438	chr11:118790354	11	118790354	-	Open sea	-0.04794781	0.01148131	0.0000721	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07376561	chr7:36022276	7	36022276	-	North shore	0.05601529	0.01341722	0.0000725	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21481950	chr6:29601498	6	29601498	GABBR1	South shore	-0.03985746	0.00954862	0.0000726	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20898358	chr17:16947406	17	16947406	MPRIP	South shore	-0.04779968	0.01145142	0.0000727	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02225847	chr16:67563418	16	67563418	FAM65A	North shore	-0.02350849	0.00563335	0.0000729	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08449748	chr16:2349846	16	2349846	ABCA3	South shelf	0.0475534	0.01139735	0.0000731	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04621866	chr8:144567481	8	144567481	ZC3H3	North shore	0.02733698	0.00655393	0.0000735	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24453118	chr13:47229927	13	47229927	LRCH1	Open sea	-0.06974882	0.0167231	0.0000735	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05741638	chr16:90084774	16	90084774	DBNDD1	North shore	0.0281037	0.00673805	0.0000735	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16705744	chr3:27756039	3	27756039	-	North shore	0.01070046	0.00256603	0.0000737	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16714091	chr9:18473902	9	18473902	ADAMTSL1	Open sea	-0.02396213	0.00574831	0.0000741	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17313709	chr14:22902298	14	22902298	-	Open sea	-0.05541625	0.01329587	0.0000743	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06204755	chr17:70484432	17	70484432	-	Open sea	-0.09244006	0.02218479	0.0000746	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16039660	chr4:184686701	4	184686701	-	Open sea	-0.07030199	0.01687376	0.0000747	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16277071	chr17:75537317	17	75537317	-	Open sea	0.05159156	0.01238222	0.0000747	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23088126	chr1:207078912	1	207078912	FAIM3	North shelf	-0.04500897	0.01080342	0.0000748	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27246744	chr3:31746590	3	31746590	OSBPL10	Open sea	-0.02477671	0.00594815	0.000075	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25216580	chr1:120173989	1	120173989	ZNF697	Open sea	-0.04172591	0.01001901	0.0000752	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01289343	chr13:114814401	13	114814401	RASA3	Island	-0.04839514	0.01162386	0.0000755	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22956254	chr12:7848647	12	7848647	GDF3	Open sea	-0.04034436	0.00969251	0.0000758	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09227119	chr20:35504403	20	35504403	C20orf118	Open sea	0.03982846	0.00956901	0.0000759	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06740442	chr1:2943306	1	2943306	-	Open sea	0.04587967	0.01102431	0.000076	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04404543	chr12:54019307	12	54019307	ATF7	North shore	-0.03112517	0.00747915	0.000076	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13987781	chr17:79520323	17	79520323	C17orf70	South shore	-0.00334068	0.00080273	0.000076	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16045423	chr22:39377790	22	39377790	APOBEC3B	Open sea	-0.08538851	0.02051967	0.0000761	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19248564	chr22:43042879	22	43042879	CYB5R3	North shelf	-0.02105617	0.00506007	0.0000761	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13718185	chr8:22877275	8	22877275	RHOBTB2	Open sea	-0.04332408	0.01041164	0.0000762	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06596075	chr12:75728752	12	75728752	GLIPR1L1	Open sea	-0.02856443	0.00686522	0.0000763	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05478824	chr17:79970135	17	79970135	ASPSCR1	South shelf	0.03136725	0.00753914	0.0000763	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04999352	chr11:63304614	11	63304614	RARRES3	Open sea	-0.04679008	0.01124759	0.0000765	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08356637	chr11:8385767	11	8385767	-	Open sea	0.04319495	0.01038428	0.0000766	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14331619	chr9:35909996	9	35909996	LOC158376	Open sea	-0.03072835	0.0073889	0.0000768	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08231696	chr1:16349079	1	16349079	CLCNKA	Open sea	0.05900166	0.01417361	0.0000772	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16211438	chr3:113560972	3	113560972	GRAMD1C	South shelf	-0.03263017	0.00784864	0.0000772	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08959039	chr13:111062266	13	111062266	COL4A2	Open sea	0.08082594	0.0194429	0.0000773	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19478079	chr17:79453653	17	79453653	-	North shore	0.08264311	0.01988569	0.0000776	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20541344	chr17:79095182	17	79095182	AATK	Island	-0.02308755	0.00555577	0.0000777	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17158750	chr20:61924382	20	61924382	COL20A1	North shelf	-0.07596386	0.01827956	0.0000777	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07370588	chr17:16569088	17	16569088	-	North shore	0.03873261	0.00932127	0.0000778	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01532010	chr19:57107283	19	57107283	ZNF71	South shore	-0.01592084	0.00383437	0.0000787	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22112435	chr1:46664449	1	46664449	POMGNT1	Open sea	-0.03846444	0.00926751	0.0000792	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11816043	chr22:39377864	22	39377864	APOBEC3B	Open sea	-0.04987557	0.01201867	0.0000793	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00875272	chr1:47695321	1	47695321	TAL1	North shore	-0.00394124	0.00095027	0.00008	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03403093	chr2:99132041	2	99132041	INPP4A	Open sea	-0.02838766	0.00684768	0.0000806	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10783149	chr14:55707866	14	55707866	-	Open sea	0.06757133	0.01630825	0.0000812	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11617821	chr4:75672135	4	75672135	BTC	Open sea	0.04787708	0.01155548	0.0000813	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09956907	chr7:94538165	7	94538165	PPP1R9A	South shore	-0.03561307	0.00859593	0.0000821	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg17566874	chr5:131411272	5	131411272	CSF2	Open sea	-0.02261881	0.00546374	0.0000823	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11060441	chr7:149485712	7	149485712	SSPO	North shore	0.03934671	0.00950849	0.0000828	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03460756	chr17:45353128	17	45353128	ITGB3	Open sea	0.04353196	0.01052026	0.0000828	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07971188	chr6:31431100	6	31431100	HCP5	Open sea	-0.03712797	0.00897321	0.0000829	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18480654	chr5:75376460	5	75376460	-	North shore	0.04230084	0.01022532	0.0000832	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11585805	chr1:47973566	1	47973566	-	North shore	0.03774892	0.00912701	0.0000834	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg27293155	chr2:38044012	2	38044012	-	Open sea	0.05024539	0.01215063	0.0000837	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02736280	chr17:1633745	17	1633745	WDR81	North shelf	0.03870737	0.00936183	0.0000838	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12327405	chr18:11751343	18	11751343	GNAL	Island	-0.03287418	0.00795201	0.000084	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16761096	chr7:51383119	7	51383119	COBL	North shore	0.05375781	0.01300773	0.0000844	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15204354	chr1:155006911	1	155006911	DCST1;DCST2	Open sea	0.02796614	0.00677028	0.000085	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02675173	chr8:99738789	8	99738789	STK3	Open sea	-0.034306	0.00830568	0.0000851	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12595667	chr2:136872094	2	136872094	CXCR4	North shore	-0.02321703	0.00562135	0.0000852	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14154456	chr6:82946781	6	82946781	IBTK	Open sea	-0.0349724	0.00847004	0.0000856	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16773741	chr22:19513017	22	19513017	CLDN5	South shore	0.04087731	0.00990411	0.0000861	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13336690	chr6:32976484	6	32976484	HLA-DOA	South shore	-0.03307281	0.00800907	0.0000862	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06603923	chr7:151217961	7	151217961	RHEB	South shore	-0.05073879	0.01229503	0.0000863	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19831403	chr10:88453678	10	88453678	LDB3	Open sea	0.04601499	0.01115097	0.0000863	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09565002	chr4:15939889	4	15939889	FGFBP1	Open sea	0.04296526	0.0104145	0.0000866	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26189139	chr8:22560972	8	22560972	-	Island	0.04348826	0.0105428	0.0000868	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg24736274	chr6:33868438	6	33868438	-	Open sea	0.04229535	0.01025538	0.0000871	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg14658493	chr7:27184077	7	27184077	HOXA5	Island	0.06307405	0.0152961	0.0000873	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18800143	chr1:16393791	1	16393791	FAM131C	Open sea	0.03566443	0.0086513	0.0000876	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23716309	chr3:51910238	3	51910238	IQCF5	Open sea	0.03860296	0.00936492	0.0000877	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02264229	chr14:95240560	14	95240560	-	South shore	0.02998189	0.00727461	0.0000879	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg21109038	chr15:90543610	15	90543610	ZNF710	Island	0.05867293	0.01423863	0.0000882	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20794351	chr8:21908746	8	21908746	-	South shelf	0.05234932	0.01270493	0.0000883	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg06127885	chr15:45421068	15	45421068	DUOX1;DUOXA1	North shore	0.02718213	0.00659743	0.0000884	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg03958883	chr11:73020729	11	73020729	ARHGEF17	South shore	-0.03418035	0.0082972	0.0000885	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19293784	chr17:20346491	17	20346491	-	Open sea	0.02065791	0.00501474	0.0000886	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11253886	chr2:47039669	2	47039669	-	Open sea	-0.02877887	0.00698698	0.0000887	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05021771	chr2:71129289	2	71129289	VAX2	North shore	0.05713183	0.01387185	0.0000889	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09065113	chr16:23798532	16	23798532	-	Open sea	0.04801299	0.01166377	0.0000895	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10623219	chr12:52242807	12	52242807	-	South shore	0.06369825	0.01547576	0.0000897	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07141055	chr16:84328127	16	84328127	WFDC1	North shore	-0.00612852	0.0014891	0.0000898	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18210365	chr15:65066710	15	65066710	RBPMS2	North shore	0.05370295	0.01305003	0.0000899	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg22268271	chr22:39548261	22	39548261	CBX7	Island	-0.01668091	0.00405352	0.0000899	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18251191	chr19:32715259	19	32715259	-	North shore	-0.07320675	0.01779383	0.0000903	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00000714	chr19:54695678	19	54695678	TSEN34	South shore	-0.02619558	0.0063684	0.0000905	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00233307	chr19:39109076	19	39109076	MAP4K1;EIF3K	North shore	-0.01964329	0.00477537	0.0000905	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13595308	chr9:128819105	9	128819105	-	Open sea	0.03064144	0.00745034	0.0000907	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11748260	chr6:30624395	6	30624395	DHX16	Open sea	0.04444773	0.01080974	0.000091	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16831185	chr17:29158530	17	29158530	ATAD5	North shore	-0.02975088	0.0072294	0.0000916	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg11275487	chr5:37836119	5	37836119	GDNF	North shore	0.03653654	0.00889499	0.0000924	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04016431	chr6:30071399	6	30071399	TRIM31	Island	-0.00353359	0.00086024	0.0000924	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25003697	chr17:79453611	17	79453611	-	North shore	0.07886481	0.01920062	0.0000925	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23377551	chr12:58130154	12	58130154	AGAP2	Island	0.05198714	0.01266278	0.0000931	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg20708711	chr13:39261109	13	39261109	FREM2	North shore	-0.00907184	0.00220957	0.0000931	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05852523	chr16:82659960	16	82659960	CDH13	North shore	0.02921884	0.00711729	0.0000932	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg19887293	chr6:33132693	6	33132693	COL11A2	South shelf	0.03638544	0.00886564	0.0000936	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg07026918	chr1:58472821	1	58472821	DAB1	Open sea	0.06574868	0.0160291	0.0000944	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12499872	chr16:58019893	16	58019893	TEPP	Island	0.05922757	0.01444892	0.0000953	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04219726	chr1:110082486	1	110082486	GPR61	Open sea	0.0326658	0.00796954	0.0000954	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26423283	chr8:6796902	8	6796902	DEFA4	Open sea	-0.04586228	0.01119033	0.0000955	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23599026	chr10:102268546	10	102268546	SEC31B	Open sea	0.02001218	0.00488264	0.0000955	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg10692693	chr7:101688648	7	101688648	CUX1	Open sea	-0.02906312	0.00707519	0.0000959	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg26646427	chr22:46770870	22	46770870	CELSR1	Island	-0.03953413	0.00964916	0.000096	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16239628	chr13:46626330	13	46626330	ZC3H13	North shore	-0.00340596	0.0008315	0.0000963	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00698916	chr6:13767628	6	13767628	-	North shore	-0.0410895	0.01003382	0.0000967	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg13264840	chr7:142494213	7	142494213	-	North shore	-0.0605787	0.01479442	0.0000968	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25877299	chr17:80273290	17	80273290	CD7	North shelf	-0.03624965	0.00885254	0.0000968	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04347477	chr12:125002007	12	125002007	NCOR2	Island	-0.0552937	0.01349726	0.000097	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg25642234	chr12:14721092	12	14721092	PLBD1	Island	0.0475876	0.01162849	0.0000976	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg05600496	chr13:80357187	13	80357187	-	Open sea	0.05754541	0.01406634	0.0000981	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg08961287	chr15:89919993	15	89919993	LOC254559	North shore	0.0388816	0.00950545	0.0000983	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg16361890	chr5:179220545	5	179220545	LTC4S	North shelf	-0.02389318	0.00584182	0.0000985	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04030848	chr22:30960881	22	30960881	GAL3ST1	Open sea	0.04676661	0.01143717	0.0000988	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg01480180	chr7:90896329	7	90896329	FZD1	Island	0.17030659	0.04165293	0.0000989	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg02552255	chr2:103104330	2	103104330	SLC9A4	Open sea	-0.04569526	0.01117646	0.000099	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg15165154	chr5:139041014	5	139041014	CXXC5	Island	-0.03587183	0.00877375	0.000099	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg23669043	chr11:66336244	11	66336244	CTSF	South shore	-0.03551703	0.00868727	0.000099	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg00701706	chr17:72931632	17	72931632	OTOP3	North shore	0.04017943	0.00982859	0.0000992	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg04063235	chr22:46508563	22	46508563	MIRLET7A3;LOC400931;MIRLET7B	Open sea	0.03510281	0.00858845	0.0000995	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg09823288	chr1:239552128	1	239552128	-	South shore	-0.06093865	0.01491101	0.0000996	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg18318818	chr17:48640257	17	48640257	CACNA1G	South shore	0.03438525	0.00841353	0.0000996	-	28603561_cleft_palate_vs_cleft_lip
Sharp GC	-	28603561	2017-06-08	Cleft palate vs cleft lip	EFO_0003959, HP_0000175	-	Additional file 5	DNA methylation	Cleft palate vs cleft lip	Sex and technical covariates	Beta values	-	Illumina HumanMethylation450	Whole blood	-	98	1	0	Both	European,Other	cg12723994	chr1:55181263	1	55181263	TTC4	North shore	-0.01264185	0.00309196	0.0000998	-	28603561_cleft_palate_vs_cleft_lip